Aliases for ENSG00000223660 Gene

Data sources for ENSG00000223660 Gene:

RNA type for ENSG00000223660 Gene

lncRNA

Aliases for ENSG00000223660 Gene

External Ids for ENSG00000223660 Gene

Previous GeneCards Identifiers for ENSG00000223660 Gene

  • GC19M054703

Summaries for ENSG00000223660 Gene

GeneCards Summary for ENSG00000223660 Gene

ENSG00000223660 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223660 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223660 Gene

Genomics for ENSG00000223660 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223660 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J054158 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.1 +39.2 39170 5.2 SP1 ZNF207 MYC ZNF580 POLR2A ZSCAN16 ZBTB10 YY1 MXD4 CTCF LENG1 lnc-TMC4-1 CNOT3 PRPF31 LENG8-AS1 TMC4 LENG8 ZNF765 ENSG00000269001 ZNF845
GH19J054136 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.6 +62.2 62234 5.1 SP1 ZNF207 MYC IKZF1 ZNF600 POLR2A ZIC2 YY1 NONO CTCF CNOT3 HSALNG0127476 lnc-TFPT-3 TMC4 ZNF765 LENG8-AS1 PRPF31 ZNF525 ZNF845 LENG8
GH19J054140 Enhancer 0.3 ENCODE 11.6 +58.0 58014 2.8 ZSCAN4 EGR2 TMC4 RPS9 ENSG00000223660 CNOT3 HSALNG0127476 HSALNG0127477 LENG1
GH19J054199 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -5.6 -5618 12.4 BCLAF1 SP1 ZNF207 ZNF600 NCOR1 MYC IKZF1 SSRP1 ZNF580 ZNF592 RPS9 HSALNG0127488 PRPF31 LENG8-AS1 LENG8 CNOT3 ZNF525 ENSG00000235681 ZNF845 ZNF761
GH19J054196 Enhancer 0.5 Ensembl 0.7 +2.9 2870 2.2 YY1 RXRA HNF4A ZBTB33 SP1 piR-52079-098 RPS9 TMC4 LILRB3 LILRA6 ENSG00000249189 LILRB5 ENSG00000223660 TSEN34
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223660 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223660 Gene

Latest Assembly
chr19:54,199,453-54,199,971
(GRCh38/hg38)
Size:
519 bases
Orientation:
Minus strand

Previous Assembly
chr19:54,703,321-54,703,838
(GRCh37/hg19 by Ensembl)
Size:
518 bases
Orientation:
Minus strand

Genomic View for ENSG00000223660 Gene

Genes around ENSG00000223660 on UCSC Golden Path with GeneCards custom track
ENSG00000223660 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223660 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223660 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223660 Gene

Proteins for ENSG00000223660 Gene

Post-translational modifications for ENSG00000223660 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223660 Gene

Domains & Families for ENSG00000223660 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223660 Gene

Function for ENSG00000223660 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223660 Gene

Localization for ENSG00000223660 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223660 Gene

Pathways & Interactions for ENSG00000223660 Gene

PathCards logo

SuperPathways for ENSG00000223660 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223660 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223660 Gene

Drugs & Compounds for ENSG00000223660 Gene

No Compound Related Data Available

Transcripts for ENSG00000223660 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223660 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000191DB0_9606 lncRNA 410 4

Ensembl: ENST00000426213 (view in UCSC) ,

LncBook: HSALNT0262173,

LNCipedia: lnc-MBOAT7-1:1,

NONCODE: NONHSAT067877.2,

URS0001BF494A_9606 lncRNA 410 1

LncBook: HSALNT0262173,

ENSG00000223660 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223660 Gene

No ASD Table

Relevant External Links for ENSG00000223660 Gene

GeneLoc Exon Structure for
ENSG00000223660

No data available for mRNA/cDNA for ENSG00000223660 Gene

Expression for ENSG00000223660 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223660 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223660 Gene

This gene is overexpressed in Whole Blood (x25.7) and Testis (x17.2).
genes like me logo Genes that share expression patterns with ENSG00000223660: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223660 Gene

Orthologs for ENSG00000223660 Gene

Evolution for ENSG00000223660 Gene

ENSEMBL:
Gene Tree for ENSG00000223660 (if available)
TreeFam:
Gene Tree for ENSG00000223660 (if available)

No data available for Orthologs for ENSG00000223660 Gene

Paralogs for ENSG00000223660 Gene

No data available for Paralogs for ENSG00000223660 Gene

Variants for ENSG00000223660 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223660 Gene

Disorders for ENSG00000223660 Gene

Additional Disease Information for ENSG00000223660

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000223660 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000223660 Gene

Publications for ENSG00000223660 Gene

No publications were found for ENSG00000223660 Gene.

No data available for Mastermind for ENSG00000223660 Gene

Products for ENSG00000223660 Gene

Sources for ENSG00000223660 Gene