Aliases for ENSG00000223649 Gene

Subcategory (RNA class) for ENSG00000223649 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000223649 Gene

  • Novel Transcript 5
  • NONHSAG004202 92
  • HSALNG0010293 167
  • Lnc-TRAF5-3 168
  • AC105275.1 5

External Ids for ENSG00000223649 Gene

Previous GeneCards Identifiers for ENSG00000223649 Gene

  • GC01P211665

Summaries for ENSG00000223649 Gene

GeneCards Summary for ENSG00000223649 Gene

ENSG00000223649 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223649 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223649 Gene

Genomics for ENSG00000223649 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000223649 Gene

Promoters and enhancers for ENSG00000223649 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J211492 Promoter/Enhancer 0.9 EPDnew Ensembl 500.7 +0.0 46 0.6 RFX1 CTBP1 MXI1 ZFHX2 RCOR1 SMARCA4 CHD2 EGR2 GATA2 ZSCAN4 ENSG00000223649 RD3 lnc-RD3-3 lnc-SLC30A1-2
GH01J211646 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +156.4 156378 4.7 CTCF NCOR1 RBAK PHB2 ZBTB5 TCF7 REST TGIF2 RAD21 EP300 SNORA16B SLC30A1 ENSG00000223649 RD3 TRAF5 ENSG00000231057 NEK2 ENSG00000229832 ENSG00000228792 LINC01693
GH01J211638 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 +149.7 149725 8 NCOR1 JUND TCF7 ZBTB25 TGIF2 EP300 SKI TEAD1 TBX3 ZKSCAN8 SLC30A1 ENSG00000223649 RD3 ENSG00000231057 NEK2 ENSG00000260805 ENSG00000228792 LINC01693 lnc-TRAF5-4
GH01J211334 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 11.3 -155.9 -155899 3.4 POLR2A TCF12 ZBTB17 ZNF384 CEBPG FOSL1 ELF1 FOS EBF1 FEZF1 ENSG00000223649 RD3 LINC00467 TRAF5 lnc-RD3-1
GH01J211468 Enhancer 1 Ensembl ENCODE 12.3 -22.6 -22595 1.9 CTCF ZIC2 GABPA REST RAD21 TRIM22 ZEB1 SMC3 NR2F2 FOXA2 LINC00467 ENSG00000223649 RD3 hsa-miR-1273e-007 lnc-RD3-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223649 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000223649 Gene

Genomic Locations for ENSG00000223649 Gene
chr1:211,492,255-211,492,917
(GRCh38/hg38)
Size:
663 bases
Orientation:
Plus strand
chr1:211,665,597-211,666,259
(GRCh37/hg19)
Size:
663 bases
Orientation:
Plus strand

Genomic View for ENSG00000223649 Gene

Genes around ENSG00000223649 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000223649 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223649 Gene

Proteins for ENSG00000223649 Gene

Post-translational modifications for ENSG00000223649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223649 Gene

Domains & Families for ENSG00000223649 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223649 Gene

Function for ENSG00000223649 Gene

Phenotypes From GWAS Catalog for ENSG00000223649 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223649 Gene

Localization for ENSG00000223649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223649 Gene

Pathways & Interactions for ENSG00000223649 Gene

PathCards logo

SuperPathways for ENSG00000223649 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000223649 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223649 Gene

Drugs & Compounds for ENSG00000223649 Gene

No Compound Related Data Available

Transcripts for ENSG00000223649 Gene

mRNA/cDNA for ENSG00000223649 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223649 Gene

No ASD Table

Relevant External Links for ENSG00000223649 Gene

GeneLoc Exon Structure for
ENSG00000223649

Expression for ENSG00000223649 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223649 Gene

mRNA expression in normal human tissues for ENSG00000223649 Gene
genes like me logo Genes that share expression patterns with ENSG00000223649: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223649 Gene

Orthologs for ENSG00000223649 Gene

Evolution for ENSG00000223649 Gene

ENSEMBL:
Gene Tree for ENSG00000223649 (if available)
TreeFam:
Gene Tree for ENSG00000223649 (if available)

No data available for Orthologs for ENSG00000223649 Gene

Paralogs for ENSG00000223649 Gene

No data available for Paralogs for ENSG00000223649 Gene

Variants for ENSG00000223649 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223649 Gene

Disorders for ENSG00000223649 Gene

No disorders were found for ENSG00000223649 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223649 Gene

Publications for ENSG00000223649 Gene

No publications were found for ENSG00000223649 Gene.

No data available for Mastermind for ENSG00000223649 Gene

Products for ENSG00000223649 Gene

Sources for ENSG00000223649 Gene