Aliases for ENSG00000223379 Gene

Subcategory (RNA class) for ENSG00000223379 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000223379 Gene

  • Novel Transcript 5
  • Lnc-SPATA31A7-1 165
  • NONHSAG052335.2 91
  • AL391987.3 5

External Ids for ENSG00000223379 Gene

Previous GeneCards Identifiers for ENSG00000223379 Gene

  • GC09P045004

Summaries for ENSG00000223379 Gene

GeneCards Summary for ENSG00000223379 Gene

ENSG00000223379 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223379 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223379 Gene

Genomics for ENSG00000223379 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223379 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J061867 Promoter 0.6 Ensembl 600.7 0.0 -26 2.2 ZSCAN4 PKNOX1 ZFHX2 MEIS2 EGR2 ENSG00000223379 ENSG00000235659 LOC102723678 LOC102723709-001 ENSG00000170152 FAM27C FAM27E4
GH09J061871 Enhancer 0.2 Ensembl 0.7 +3.3 3274 0.4 piR-46835-005 ENSG00000223379 LOC102723678 ENSG00000170152 FAM27C FAM27E4
GH09J061884 Enhancer 0.2 Ensembl 0.4 +16.1 16074 0.8 ENSG00000238749 piR-57133-608 ENSG00000223379 ENSG00000170152 FAM27E4 FAM27C
GH09J061885 Enhancer 0.2 Ensembl 0.4 +15.4 15374 0.2 ENSG00000238749 piR-57133-608 ENSG00000223379 ENSG00000170152 FAM27E4 FAM27C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223379 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223379 Gene

Genomic Locations for ENSG00000223379 Gene
chr9:61,868,727-61,887,084
(GRCh38/hg38)
Size:
18,358 bases
Orientation:
Plus strand
chr9:45,004,879-45,023,236
(GRCh37/hg19)
Size:
18,358 bases
Orientation:
Plus strand

Genomic View for ENSG00000223379 Gene

Genes around ENSG00000223379 on UCSC Golden Path with GeneCards custom track
ENSG00000223379 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223379 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223379 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223379 Gene

Proteins for ENSG00000223379 Gene

Post-translational modifications for ENSG00000223379 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223379 Gene

Domains & Families for ENSG00000223379 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223379 Gene

Function for ENSG00000223379 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223379 Gene

Localization for ENSG00000223379 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223379 Gene

Pathways & Interactions for ENSG00000223379 Gene

PathCards logo

SuperPathways for ENSG00000223379 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223379 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223379 Gene

Drugs & Compounds for ENSG00000223379 Gene

No Compound Related Data Available

Transcripts for ENSG00000223379 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223379 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000131CBA_9606 lncRNA 492 3

Ensembl: ENST00000421848 (view in UCSC) ,

LNCipedia: lnc-SPATA31A7-1:1,

NONCODE: NONHSAT131405.2,

ENSG00000223379 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223379 Gene

No ASD Table

Relevant External Links for ENSG00000223379 Gene

GeneLoc Exon Structure for
ENSG00000223379

No data available for mRNA/cDNA for ENSG00000223379 Gene

Expression for ENSG00000223379 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223379 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223379 Gene

This gene is overexpressed in Brain - Cerebellum (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000223379: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223379 Gene

Orthologs for ENSG00000223379 Gene

Evolution for ENSG00000223379 Gene

ENSEMBL:
Gene Tree for ENSG00000223379 (if available)
TreeFam:
Gene Tree for ENSG00000223379 (if available)

No data available for Orthologs for ENSG00000223379 Gene

Paralogs for ENSG00000223379 Gene

No data available for Paralogs for ENSG00000223379 Gene

Variants for ENSG00000223379 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223379 Gene

Disorders for ENSG00000223379 Gene

Additional Disease Information for ENSG00000223379

No disorders were found for ENSG00000223379 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000223379 Gene

Publications for ENSG00000223379 Gene

No publications were found for ENSG00000223379 Gene.

No data available for Mastermind for ENSG00000223379 Gene

Products for ENSG00000223379 Gene

Sources for ENSG00000223379 Gene