Aliases for ENSG00000222042 Gene

Subcategory (RNA class) for ENSG00000222042 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000222042 Gene

  • Novel Transcript 5
  • NONHSAG032546 92
  • HSALNG0132361 167
  • Lnc-MRPL39-6 168
  • AP001341.1 5

External Ids for ENSG00000222042 Gene

Previous GeneCards Identifiers for ENSG00000222042 Gene

  • GC21M025464
  • GC21M026541

Summaries for ENSG00000222042 Gene

GeneCards Summary for ENSG00000222042 Gene

ENSG00000222042 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000222042 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000222042 Gene

Genomics for ENSG00000222042 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000222042 Gene

Promoters and enhancers for ENSG00000222042 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J025188 Enhancer 1 Ensembl ENCODE 6.6 +174.1 174067 2.8 SP1 RELA MEF2C RCOR1 BCL11A CBFB ZNF384 ARNT MEF2B BATF ENSG00000222042 RNA5SP489 RF00001-201 piR-56069
GH21J025170 Enhancer 0.5 Ensembl 6.2 +190.6 190566 1 FOS GABPA REST POLR2A CEBPB MYC STAT3 piR-56069 ENSG00000222042 RF00001-201 RNA5SP489
GH21J025184 Enhancer 0.2 Ensembl 7.1 +176.6 176567 1.4 ENSG00000222042 RF00001-201 piR-56069 RNA5SP489
GH21J025328 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 +32.7 32714 1.9 JUND FOS MAFK STAT3 POLR2A CEBPB piR-60985-063 HSALNG0132364 ENSG00000222042
GH21J025298 Enhancer 0.8 Ensembl 0.2 +63.2 63167 1 SP1 EP300 JUND RELA MEF2C RCOR1 TRIM22 BCL11A TCF12 CBFB MRPL39 HSALNG0132364 lnc-MRPL39-22 ENSG00000222042
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000222042 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000222042 Gene

Genomic Locations for ENSG00000222042 Gene
chr21:25,169,431-25,361,868
(GRCh38/hg38)
Size:
192,438 bases
Orientation:
Minus strand
chr21:26,541,745-26,706,139
(GRCh37/hg19)
Size:
164,395 bases
Orientation:
Minus strand

Genomic View for ENSG00000222042 Gene

Genes around ENSG00000222042 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000222042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000222042 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000222042 Gene

Proteins for ENSG00000222042 Gene

Post-translational modifications for ENSG00000222042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000222042 Gene

Domains & Families for ENSG00000222042 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000222042 Gene

Function for ENSG00000222042 Gene

Phenotypes From GWAS Catalog for ENSG00000222042 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000222042 Gene

Localization for ENSG00000222042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000222042 Gene

Pathways & Interactions for ENSG00000222042 Gene

PathCards logo

SuperPathways for ENSG00000222042 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000222042 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000222042 Gene

Drugs & Compounds for ENSG00000222042 Gene

No Compound Related Data Available

Transcripts for ENSG00000222042 Gene

mRNA/cDNA for ENSG00000222042 Gene

4 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000222042 Gene

No ASD Table

Relevant External Links for ENSG00000222042 Gene

GeneLoc Exon Structure for
ENSG00000222042

Expression for ENSG00000222042 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000222042 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000222042 Gene

This gene is overexpressed in Testis (x22.2).
genes like me logo Genes that share expression patterns with ENSG00000222042: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000222042 Gene

Orthologs for ENSG00000222042 Gene

Evolution for ENSG00000222042 Gene

ENSEMBL:
Gene Tree for ENSG00000222042 (if available)
TreeFam:
Gene Tree for ENSG00000222042 (if available)

No data available for Orthologs for ENSG00000222042 Gene

Paralogs for ENSG00000222042 Gene

No data available for Paralogs for ENSG00000222042 Gene

Variants for ENSG00000222042 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000222042 Gene

Disorders for ENSG00000222042 Gene

No disorders were found for ENSG00000222042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000222042 Gene

Publications for ENSG00000222042 Gene

No publications were found for ENSG00000222042 Gene.

No data available for Mastermind for ENSG00000222042 Gene

Products for ENSG00000222042 Gene

Sources for ENSG00000222042 Gene