Aliases for ENSG00000222017 Gene

Subcategory (RNA class) for ENSG00000222017 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000222017 Gene

  • Novel Transcript, Antisense To BOLL 5
  • HSALNG0021397 164
  • AC011997.1 5

External Ids for ENSG00000222017 Gene

Previous GeneCards Identifiers for ENSG00000222017 Gene

  • GC02P198266
  • GC02P198557

Summaries for ENSG00000222017 Gene

GeneCards Summary for ENSG00000222017 Gene

ENSG00000222017 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000222017 include Astrocytoma.

Additional gene information for ENSG00000222017 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000222017 Gene

Genomics for ENSG00000222017 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000222017 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J197693 Promoter 0.7 Ensembl 600.7 +0.5 494 1.2 PRDM10 PRDM1 ZNF341 ZBTB48 KDM1A ZNF335 ZNF24 ZBTB33 KLF1 ENSG00000222017 PLCL1 RFTN2 piR-39488-171 MARS2
GH02J197704 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 0.4 +13.5 13523 4.7 SP1 HNRNPL CTCF TFE3 POLR2A LARP7 ZIC2 RBFOX2 RXRB PATZ1 MARS2 lnc-BOLL-1 piR-36682 SF3B1 PLCL1 GTF3C3 NPM1P46 RFTN2 ENSG00000222017 BOLL
GH02J197713 Enhancer 0.5 Ensembl 0.4 +20.2 20195 0.2 SOX13 FOXP1 MAFK KDM1A SOX5 MIXL1 BOLL MARS2 piR-36682 piR-60985-060 ENSG00000222017
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000222017 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000222017 Gene

Genomic Locations for ENSG00000222017 Gene
chr2:197,693,106-197,774,823
(GRCh38/hg38)
Size:
81,718 bases
Orientation:
Plus strand
chr2:198,557,830-198,639,547
(GRCh37/hg19)
Size:
81,718 bases
Orientation:
Plus strand

Genomic View for ENSG00000222017 Gene

Genes around ENSG00000222017 on UCSC Golden Path with GeneCards custom track
ENSG00000222017 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000222017 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000222017 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000222017 Gene

Proteins for ENSG00000222017 Gene

Post-translational modifications for ENSG00000222017 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000222017 Gene

Domains & Families for ENSG00000222017 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000222017 Gene

Function for ENSG00000222017 Gene

Phenotypes From GWAS Catalog for ENSG00000222017 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000222017 Gene

Localization for ENSG00000222017 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000222017 Gene

Pathways & Interactions for ENSG00000222017 Gene

PathCards logo

SuperPathways for ENSG00000222017 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000222017 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000222017 Gene

Drugs & Compounds for ENSG00000222017 Gene

No Compound Related Data Available

Transcripts for ENSG00000222017 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000222017 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007BC608_9606 lncRNA 1032 2

Ensembl: ENST00000409845 (view in UCSC) ,

LncBook: HSALNT0045553,

ENSG00000222017 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000222017 Gene

No ASD Table

Relevant External Links for ENSG00000222017 Gene

GeneLoc Exon Structure for
ENSG00000222017

No data available for mRNA/cDNA for ENSG00000222017 Gene

Expression for ENSG00000222017 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000222017 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000222017 Gene

This gene is overexpressed in Brain - Substantia nigra (x14.0).
genes like me logo Genes that share expression patterns with ENSG00000222017: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000222017 Gene

Orthologs for ENSG00000222017 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000222017 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 95 (a)
OneToOne
Species where no ortholog for ENSG00000222017 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000222017 Gene

ENSEMBL:
Gene Tree for ENSG00000222017 (if available)
TreeFam:
Gene Tree for ENSG00000222017 (if available)

Paralogs for ENSG00000222017 Gene

No data available for Paralogs for ENSG00000222017 Gene

Variants for ENSG00000222017 Gene

Variation tolerance for ENSG00000222017 Gene

Gene Damage Index Score: 1.06; 21.74% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000222017 Gene

Disorders for ENSG00000222017 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000222017 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000222017

genes like me logo Genes that share disorders with ENSG00000222017: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000222017 Gene

Publications for ENSG00000222017 Gene

No publications were found for ENSG00000222017 Gene.

No data available for Mastermind for ENSG00000222017 Gene

Products for ENSG00000222017 Gene

Sources for ENSG00000222017 Gene