ENSG00000221673 Gene (RNA Gene)

 

GC01P219962
GIFtS:
5
See more...

Aliases for ENSG00000221673 Gene

Subcategory (RNA class) for ENSG00000221673 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000221673 Gene

  • AC103590.1 5
  • SNORD3@L20 170
  • SNODB1961 177
  • SNODB1999 177
  • RF00012 168

External Ids for ENSG00000221673 Gene

Previous GeneCards Identifiers for ENSG00000221673 Gene

  • GC01P218203
  • GC01P220135

Summaries for ENSG00000221673 Gene

GeneCards Summary for ENSG00000221673 Gene

ENSG00000221673 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000221673 Gene

Additional gene information for ENSG00000221673 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000221673 Gene

Genomics for ENSG00000221673 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000221673 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J219902 Enhancer 1.2 Ensembl ENCODE 11.1 -56.7 -56725 6.1 RNF2 ARHGAP35 ZNF512 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A PKNOX1 lnc-EPRS-4 ZC3H11B SLC30A10 ENSG00000221673 RPS15AP12 piR-57195-025
GH01J219917 Enhancer 0.8 Ensembl ENCODE 11.2 -44.5 -44457 1.6 CEBPB NFE2 ZNF316 JUN JUND EP300 FOSL2 NR2F1 ATF4 HIC1 SLC30A10 ENSG00000221673 piR-48820-010 lnc-EPRS-4 ZC3H11B
GH01J219930 Enhancer 0.8 ENCODE 10.8 -31.4 -31381 1.6 PRDM10 SP1 CEBPA ZBTB44 ZXDB TSHZ1 CEBPB ZSCAN5C OSR2 ATF3 ENSG00000221673 SLC30A10 LOC107985281 MN309174-026 ZC3H11B
GH01J219938 Enhancer 0.6 ENCODE 11.5 -23.8 -23758 0.2 RFX1 ZNF692 JUND PKNOX1 DPF2 HMBOX1 GATAD2A ZSCAN5C FOSL1 NFIC ENSG00000221673 LOC107985281 MN309174-026 SLC30A10 ZC3H11B
GH01J219913 Enhancer 0.3 Ensembl 11.1 -49.4 -49351 0.2 SCRT2 PRDM6 SLC30A10 ENSG00000221673 lnc-EPRS-4 piR-48820-010 ZC3H11B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000221673 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000221673 Gene

Genomic Locations for ENSG00000221673 Gene
chr1:219,962,652-219,962,865
(GRCh38/hg38)
Size:
214 bases
Orientation:
Plus strand
chr1:220,136,028-220,136,206
(GRCh37/hg19)
Size:
179 bases
Orientation:
Plus strand

Genomic View for ENSG00000221673 Gene

Genes around ENSG00000221673 on UCSC Golden Path with GeneCards custom track
ENSG00000221673 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000221673 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000221673 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000221673 Gene

Proteins for ENSG00000221673 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000221673 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000221673 Gene

Domains & Families for ENSG00000221673 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000221673 Gene

Function for ENSG00000221673 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000221673 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000221673 Gene

Localization for ENSG00000221673 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000221673 Gene

Pathways & Interactions for ENSG00000221673 Gene

PathCards logo

SuperPathways for ENSG00000221673 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000221673 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000221673 Gene

Drugs & Compounds for ENSG00000221673 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000221673 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000221673 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D4F4D_9606 snoRNA 214 3

Ensembl: ENST00000408746 (view in UCSC) ,

Rfam: RF00012,

snoDB: SNODB1961,

URS0000822912_9606 snoRNA 213 2

snoDB: SNODB1999,

snOPY: Homo_sapiens300370,

ENSG00000221673 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000221673 Gene

No ASD Table

Relevant External Links for ENSG00000221673 Gene

GeneLoc Exon Structure for
ENSG00000221673

No data available for mRNA/cDNA for ENSG00000221673 Gene

Expression for ENSG00000221673 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000221673 Gene

mRNA expression in normal human tissues for ENSG00000221673 Gene
mRNA expression by GTEx for ENSG00000221673 Gene
genes like me logo Genes that share expression patterns with ENSG00000221673: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000221673 Gene

Orthologs for ENSG00000221673 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000221673 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U3 31
  • 99 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia U3 31
  • 57 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia U3 31 31 31 31 31 31 31 31 31
  • 56 (a)
 ManyToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia U3 31 31 31 31 31 31 31 31
  • 55 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves U3 31 31 31
  • 50 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia U3 31
  • 50 (a)
 OneToMany
Species where no ortholog for ENSG00000221673 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000221673 Gene

ENSEMBL:
Gene Tree for ENSG00000221673 (if available)
TreeFam:
Gene Tree for ENSG00000221673 (if available)

Paralogs for ENSG00000221673 Gene

No data available for Paralogs for ENSG00000221673 Gene

Variants for ENSG00000221673 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000221673 Gene

Disorders for ENSG00000221673 Gene

No disorders were found for ENSG00000221673 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000221673 Gene

Publications for ENSG00000221673 Gene

No publications were found for ENSG00000221673 Gene.

No data available for Mastermind for ENSG00000221673 Gene

Products for ENSG00000221673 Gene

Sources for ENSG00000221673 Gene