Aliases for ENSG00000221461 Gene

Subcategory (RNA class) for ENSG00000221461 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000221461 Gene

  • HSALNG0068188 164
  • AC068228.1 5
  • SNODB1924 177
  • RF00012 168

External Ids for ENSG00000221461 Gene

Previous GeneCards Identifiers for ENSG00000221461 Gene

  • GC08M124263
  • GC08M124193
  • GC08M124195
  • GC08M124198
  • GC08M124201

Summaries for ENSG00000221461 Gene

GeneCards Summary for ENSG00000221461 Gene

ENSG00000221461 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000221461 Gene

Additional gene information for ENSG00000221461 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000221461 Gene

Genomics for ENSG00000221461 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000221461 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J123178 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 600.7 +1.1 1100 2.7 LEF1 IKZF1 JUND MTA2 PKNOX1 MTA1 ZNF24 DPF2 HDAC1 ETV6 FAM83A ENSG00000221461 lnc-C8orf76-4 lnc-FAM83A-2 FAM83A-AS1 NTAQ1 C8orf76
GH08J123148 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.1 +31.2 31241 1.4 CREB1 ZBTB33 ZNF629 LEF1 JUND MTA1 BRD9 DPF2 SOX6 EP300 FAM83A FAM83A-AS1 ENSG00000221461 ENSG00000253258 DERL1 TBC1D31 ENSG00000238901 ENSG00000253607 RNU6-875P MIR548AA1
GH08J123216 Enhancer 0.9 Ensembl ENCODE 10.3 -36.9 -36884 1.8 CREB1 REST SP1 CEBPA CEBPB BRCA1 FOXA2 CHD2 JUN ATF3 MIR4663 lnc-FAM83A-3 FAM83A ENSG00000253258 ENSG00000221461 lnc-ZHX1-3 C8orf76
GH08J123220 Enhancer 0.7 ENCODE 11.1 -40.3 -40281 0.2 CTCF IKZF1 ZNF692 REST RAD21 SMARCA5 ZNF444 SMC3 DEK ARNT FAM83A ENSG00000253258 ENSG00000221461 lnc-FAM83A-3 lnc-ZHX1-3 C8orf76
GH08J123212 Enhancer 0.2 Ensembl 10.8 -31.8 -31776 1.4 FAM83A ENSG00000253258 ENSG00000221461 MIR4663 FAM83A-AS1 C8orf76
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000221461 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000221461 Gene

Genomic Locations for ENSG00000221461 Gene
chr8:123,180,310-123,180,525
(GRCh38/hg38)
Size:
216 bases
Orientation:
Minus strand
chr8:124,192,551-124,192,765
(GRCh37/hg19)
Size:
215 bases
Orientation:
Minus strand

Genomic View for ENSG00000221461 Gene

Genes around ENSG00000221461 on UCSC Golden Path with GeneCards custom track
ENSG00000221461 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000221461 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000221461 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000221461 Gene

Proteins for ENSG00000221461 Gene

Post-translational modifications for ENSG00000221461 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000221461 Gene

Domains & Families for ENSG00000221461 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000221461 Gene

Function for ENSG00000221461 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000221461 Gene

Localization for ENSG00000221461 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000221461 Gene

Pathways & Interactions for ENSG00000221461 Gene

PathCards logo

SuperPathways for ENSG00000221461 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000221461 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000221461 Gene

Drugs & Compounds for ENSG00000221461 Gene

No Compound Related Data Available

Transcripts for ENSG00000221461 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000221461 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000665D44_9606 snoRNA 216 4

Ensembl: ENST00000408534 (view in UCSC) ,

LncBook: HSALNT0142976,

Rfam: RF00012,

snoDB: SNODB1924,

ENSG00000221461 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000221461 Gene

No ASD Table

Relevant External Links for ENSG00000221461 Gene

GeneLoc Exon Structure for
ENSG00000221461

No data available for mRNA/cDNA for ENSG00000221461 Gene

Expression for ENSG00000221461 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000221461 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000221461 Gene

This gene is overexpressed in Esophagus - Mucosa (x23.4), Vagina (x13.1), Cervix - Ectocervix (x7.0), and Minor Salivary Gland (x5.1).
genes like me logo Genes that share expression patterns with ENSG00000221461: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000221461 Gene

Orthologs for ENSG00000221461 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000221461 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U3 31
  • 97 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U3 31 31 31 31 31 31 31 31 31
  • 69 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U3 31 31 31 31 31 31 31 31
  • 52 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U3 31 31 31
  • 60 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U3 31
  • 59 (a)
OneToMany
Species where no ortholog for ENSG00000221461 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000221461 Gene

ENSEMBL:
Gene Tree for ENSG00000221461 (if available)
TreeFam:
Gene Tree for ENSG00000221461 (if available)

Paralogs for ENSG00000221461 Gene

No data available for Paralogs for ENSG00000221461 Gene

Variants for ENSG00000221461 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000221461 Gene

Disorders for ENSG00000221461 Gene

No disorders were found for ENSG00000221461 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000221461 Gene

Publications for ENSG00000221461 Gene

No publications were found for ENSG00000221461 Gene.

No data available for Mastermind for ENSG00000221461 Gene

Products for ENSG00000221461 Gene

Sources for ENSG00000221461 Gene