ENSG00000221125 Gene (RNA Gene)

 

GC19M049950
GIFtS:
10

Aliases for ENSG00000221125 Gene

Subcategory (RNA class) for ENSG00000221125 Gene

snoRNA

Number of RNA Genes sources:

5 / 14

Aliases for ENSG00000221125 Gene

  • Small Nucleolar RNA U3 5
  • HSALNG0127057 167
  • NONHSAG026282 92
  • Lnc-NUP62-2 168
  • AC011452.6 174
  • RF00012 172
  • U3 5

External Ids for ENSG00000221125 Gene

Previous GeneCards Identifiers for ENSG00000221125 Gene

  • GC19M055148
  • GC19M050452

Summaries for ENSG00000221125 Gene

GeneCards Summary for ENSG00000221125 Gene

ENSG00000221125 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000221125 Gene

Additional gene information for ENSG00000221125 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000221125 Gene

Genomics for ENSG00000221125 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000221125 Gene

Promoters and enhancers for ENSG00000221125 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J050022 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11 -75.4 -75448 4.9 FOXK2 ZBTB40 ZNF217 EP300 ZSCAN5C SIN3A NRF1 TCF12 POLR2G USF1 ZNF473 VRK3 lnc-SIGLEC11-2 SIGLEC16 POLD1 PTOV1-AS2 PNKP NUP62 IRF3 PRR12
GH19J050202 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.3 -255.7 -255732 5.8 ZNF217 CTCF POLR2G PHF8 CLOCK ZNF623 ZBTB26 KLF4 RFX1 ZNF740 MYH14 ENSG00000221125 ENSG00000276002
GH19J049910 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11 +37.5 37539 3.9 CTCF SP1 RELA POLR2A TCF12 POLR2G RBM22 NBN NR2C1 BATF AKT1S1 TBC1D17 PTOV1 ENSG00000221125 NUP62 NR1H2 IL4I1 ATF5 FCGRT RPS11
GH19J049987 Enhancer 1.1 ENCODE 12.1 -37.8 -37772 0.2 ZBTB40 ZNF217 SIN3A USF1 RBAK TEAD4 ZNF10 EP300 REST KDM6A VRK3 FLT3LG RRAS NR1H2 ENSG00000221125 ZNF473 RUVBL2 TEAD2 FCGRT ENSG00000268157
GH19J049983 Enhancer 0.9 Ensembl ENCODE 12.5 -34.2 -34220 0.3 CTCF ZNF423 GABPA REST MYC RAD21 TRIM22 SMC3 HDAC2 RXRA lnc-ZNF473-4 SIGLEC16 SIGLEC11 ENSG00000221125 IL4I1 NUP62 ATF5 lnc-SIGLEC11-1 VRK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000221125 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000221125 Gene

Genomic Locations for ENSG00000221125 Gene
chr19:49,949,316-49,949,527
(GRCh38/hg38)
Size:
212 bases
Orientation:
Minus strand
chr19:50,452,574-50,452,784
(GRCh37/hg19)
Size:
211 bases
Orientation:
Minus strand

Genomic View for ENSG00000221125 Gene

Genes around ENSG00000221125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000221125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000221125 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000221125 Gene

Proteins for ENSG00000221125 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000221125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000221125 Gene

Domains & Families for ENSG00000221125 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000221125 Gene

Function for ENSG00000221125 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000221125 Gene

Localization for ENSG00000221125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000221125 Gene

Pathways & Interactions for ENSG00000221125 Gene

PathCards logo

SuperPathways for ENSG00000221125 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000221125 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000221125 Gene

Drugs & Compounds for ENSG00000221125 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000221125 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000221125 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000221125 Gene

No ASD Table

Relevant External Links for ENSG00000221125 Gene

GeneLoc Exon Structure for
ENSG00000221125

Expression for ENSG00000221125 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000221125 Gene

mRNA expression in normal human tissues for ENSG00000221125 Gene
mRNA expression by GTEx for ENSG00000221125 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000221125 Gene

This gene is overexpressed in Ovary (x21.5), Spleen (x9.1), and Adrenal Gland (x6.3).
genes like me logo Genes that share expression patterns with ENSG00000221125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000221125 Gene

Orthologs for ENSG00000221125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000221125 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U3 31
  • 100 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U3 31 31 31 31 31 31 31 31 31
  • 61 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia U3 31 31 31 31 31 31 31 31
  • 60 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves U3 31 31 31
  • 60 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia U3 31
  • 58 (a)
 OneToMany
Species where no ortholog for ENSG00000221125 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000221125 Gene

ENSEMBL:
Gene Tree for ENSG00000221125 (if available)
TreeFam:
Gene Tree for ENSG00000221125 (if available)

Paralogs for ENSG00000221125 Gene

No data available for Paralogs for ENSG00000221125 Gene

Variants for ENSG00000221125 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000221125 Gene

Disorders for ENSG00000221125 Gene

No disorders were found for ENSG00000221125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000221125 Gene

Publications for ENSG00000221125 Gene

No publications were found for ENSG00000221125 Gene.

No data available for Mastermind for ENSG00000221125 Gene

Products for ENSG00000221125 Gene

Sources for ENSG00000221125 Gene