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ENSG00000221125 Gene(RNA Gene)

 

GCID:
GC19M049950
GIFtS:
8
Genes Participants
UDN Logo

Aliases for ENSG00000221125 Gene

Subcategory (RNA class) for ENSG00000221125 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000221125 Gene

  • RF00012 5

External Ids for ENSG00000221125 Gene

ORGUL Members for ENSG00000221125 Gene

Previous GeneCards Identifiers for ENSG00000221125 Gene

  • GC19M055148
  • GC19M050452

Summaries for ENSG00000221125 Gene

GeneCards Summary for ENSG00000221125 Gene

ENSG00000221125 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000221125 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000221125 Gene

Genomics for ENSG00000221125 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000221125 Gene

Promoters and enhancers for ENSG00000221125 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J050022 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11 -75.3 -75294 4.5 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 ZNF473 VRK3 POLD1 NUP62 PTOV1-AS2 SNORD35A IRF3 SNORD35B ALDH16A1 PNKP
GH19J050202 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 9.3 -255.7 -255732 5.8 PKNOX1 CLOCK ATF1 SIN3A GLIS2 FOS SP3 RXRA SP5 NFYC MYH14 NUP62 ENSG00000268047 TSKS ZNF473 VRK3 POLD1 NOSIP DKKL1 SLC6A16
GH19J049910 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11 +37.5 37539 3.9 HDGF PKNOX1 FOXA2 ARID4B BATF IRF4 RAD21 ZNF121 ZNF143 ATF7 TBC1D17 AKT1S1 PTOV1 ENSG00000221125 NUP62 NR1H2 IL4I1 ATF5 FCGRT RPS11
GH19J049987 Enhancer 1.1 ENCODE 12.1 -37.8 -37772 0.2 MLX ZFP64 DMAP1 IRF4 SLC30A9 ZNF213 E2F8 ZNF143 NFYC MEF2D NUP62 PRR12 PTOV1-AS2 POLD1 SNORD35A VRK3 IRF3 PIH1D1 SNORD35B ALDH16A1
GH19J049983 Enhancer 0.7 ENCODE 12.4 -34.3 -34292 0.2 HDGF CTCF FOXA2 SAP130 RB1 TEAD4 ARID4B IRF4 RAD21 CC2D1A SIGLEC16 ENSG00000221125 IL4I1 NUP62 ATF5 ENSG00000276729 VRK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000221125 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000221125 Gene

Genomic Locations for ENSG00000221125 Gene
chr19:49,949,316-49,949,527
(GRCh38/hg38)
Size:
212 bases
Orientation:
Minus strand
chr19:50,452,574-50,452,784
(GRCh37/hg19)
Size:
211 bases
Orientation:
Minus strand

Genomic View for ENSG00000221125 Gene

Genes around ENSG00000221125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000221125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000221125 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000221125 Gene

Proteins for ENSG00000221125 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000221125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000221125 Gene

Domains & Families for ENSG00000221125 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000221125 Gene

Function for ENSG00000221125 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000221125 Gene

Localization for ENSG00000221125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000221125 Gene

Pathways & Interactions for ENSG00000221125 Gene

SuperPathways for ENSG00000221125 Gene

PathCards logo More details on SuperPathways for ENSG00000221125
No Data Available

Interacting Proteins for ENSG00000221125 Gene

Gene Ontology (GO) - Biological Process for ENSG00000221125 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000221125 Gene

Drugs & Compounds for ENSG00000221125 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000221125 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000221125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000221125 Gene

No ASD Table

Relevant External Links for ENSG00000221125 Gene

GeneLoc Exon Structure for
ENSG00000221125

Expression for ENSG00000221125 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000221125 Gene

mRNA expression in normal human tissues for ENSG00000221125 Gene
mRNA expression by GTEx for ENSG00000221125 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000221125 Gene

This gene is overexpressed in Ovary (x21.5), Spleen (x9.1), and Adrenal Gland (x6.3).
genes like me logo Genes that share expression patterns with ENSG00000221125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000221125 Gene

Orthologs for ENSG00000221125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000221125 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U3 34
  • 100 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U3 34 34 34 34 34 34 34 34 34
  • 61 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia U3 34 34 34 34 34 34 34 34
  • 60 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves U3 34 34 34
  • 60 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia U3 34
  • 58 (a)
 OneToMany
Species where no ortholog for ENSG00000221125 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000221125 Gene

ENSEMBL:
Gene Tree for ENSG00000221125 (if available)
TreeFam:
Gene Tree for ENSG00000221125 (if available)

Paralogs for ENSG00000221125 Gene

No data available for Paralogs for ENSG00000221125 Gene

Variants for ENSG00000221125 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000221125 Gene

Disorders for ENSG00000221125 Gene

No disorders were found for ENSG00000221125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000221125 Gene

Publications for ENSG00000221125 Gene

No publications were found for ENSG00000221125 Gene.

Products for ENSG00000221125 Gene

Sources for ENSG00000221125 Gene

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