Aliases for ENSG00000213121 Gene

Subcategory (RNA class) for ENSG00000213121 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000213121 Gene

  • Novel Transcript 5
  • AL590867.1 5
  • Lnc-VIP-10 168

External Ids for ENSG00000213121 Gene

Previous GeneCards Identifiers for ENSG00000213121 Gene

  • GC12M128155
  • GC12M129589
  • GC06P153552

Summaries for ENSG00000213121 Gene

GeneCards Summary for ENSG00000213121 Gene

ENSG00000213121 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000213121 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000213121 Gene

Genomics for ENSG00000213121 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000213121 Gene

Promoters and enhancers for ENSG00000213121 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J153038 Enhancer 0.3 ENCODE 11.4 -192.7 -192714 1.1 FOS ENSG00000213121 piR-54131-002 RGS17
GH06J153155 Enhancer 0.2 Ensembl 11.1 -75.4 -75419 0.6 RGS17 ENSG00000213121 RF00001-294 RNA5SP224 piR-33735-087
GH06J153166 Enhancer 0.8 Ensembl ENCODE 0.2 -63.4 -63410 3.5 TCF12 JUND FOS ZNF623 CREB1 MAFF REST FOSL2 MAFK JUN RGS17 RNA5SP224 RF00001-294 ENSG00000213121
GH06J153170 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.2 -60.6 -60580 1.1 JUND FOS CREB1 FOSL2 EHMT2 STAT3 RNA5SP224 RF00001-294 ENSG00000213121
GH06J153209 Enhancer 0.5 Ensembl 0.4 -20.9 -20919 1.2 ATF2 JUND SETDB1 ATF7 ZSCAN29 RUNX3 ENSG00000213121 RF00001-294 RNA5SP224
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000213121 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000213121 Gene

Genomic Locations for ENSG00000213121 Gene
chr6:153,231,320-153,347,488
(GRCh38/hg38)
Size:
116,169 bases
Orientation:
Plus strand
chr6:153,552,455-153,668,623
(GRCh37/hg19)
Size:
116,169 bases
Orientation:
Plus strand

Genomic View for ENSG00000213121 Gene

Genes around ENSG00000213121 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000213121 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000213121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000213121 Gene

Proteins for ENSG00000213121 Gene

Post-translational modifications for ENSG00000213121 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000213121 Gene

Domains & Families for ENSG00000213121 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000213121 Gene

Function for ENSG00000213121 Gene

Phenotypes From GWAS Catalog for ENSG00000213121 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000213121 Gene

Localization for ENSG00000213121 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000213121 Gene

Pathways & Interactions for ENSG00000213121 Gene

PathCards logo

SuperPathways for ENSG00000213121 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000213121 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000213121 Gene

Drugs & Compounds for ENSG00000213121 Gene

No Compound Related Data Available

Transcripts for ENSG00000213121 Gene

mRNA/cDNA for ENSG00000213121 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000213121 Gene

No ASD Table

Relevant External Links for ENSG00000213121 Gene

GeneLoc Exon Structure for
ENSG00000213121

Expression for ENSG00000213121 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000213121 Gene

genes like me logo Genes that share expression patterns with ENSG00000213121: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000213121 Gene

Orthologs for ENSG00000213121 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000213121 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 31
  • 58 (a)
OneToMany
-- 31
  • 54 (a)
OneToMany
-- 31
  • 41 (a)
OneToMany
-- 31
  • 37 (a)
OneToMany
-- 31
  • 35 (a)
OneToMany
-- 31
  • 30 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 42 (a)
OneToMany
-- 31
  • 42 (a)
OneToMany
-- 31
  • 42 (a)
OneToMany
-- 31
  • 41 (a)
OneToMany
-- 31
  • 40 (a)
OneToMany
-- 31
  • 39 (a)
OneToMany
-- 31
  • 39 (a)
OneToMany
-- 31
  • 39 (a)
OneToMany
-- 31
  • 37 (a)
OneToMany
-- 31
  • 37 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 36 (a)
OneToMany
-- 31
  • 34 (a)
OneToMany
-- 31
  • 34 (a)
OneToMany
-- 31
  • 34 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 33 (a)
OneToMany
-- 31
  • 32 (a)
OneToMany
-- 31
  • 32 (a)
OneToMany
-- 31
  • 32 (a)
OneToMany
-- 31
  • 31 (a)
OneToMany
-- 31
  • 31 (a)
OneToMany
-- 31
  • 30 (a)
OneToMany
-- 31
  • 30 (a)
OneToMany
-- 31
  • 30 (a)
OneToMany
-- 31
  • 29 (a)
OneToMany
-- 31
  • 28 (a)
OneToMany
-- 31
  • 28 (a)
OneToMany
-- 31
  • 27 (a)
OneToMany
-- 31
  • 27 (a)
OneToMany
-- 31
  • 26 (a)
OneToMany
-- 31
  • 26 (a)
OneToMany
-- 31
  • 26 (a)
OneToMany
-- 31
  • 26 (a)
OneToMany
-- 31
  • 26 (a)
OneToMany
-- 31
  • 23 (a)
OneToMany
-- 31
  • 23 (a)
OneToMany
-- 31
  • 21 (a)
OneToMany
-- 31
  • 21 (a)
OneToMany
-- 31
  • 19 (a)
OneToMany
-- 31
  • 19 (a)
OneToMany
-- 31
  • 18 (a)
OneToMany
-- 31
  • 18 (a)
OneToMany
-- 31
  • 16 (a)
OneToMany
-- 31
  • 15 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 31
  • 14 (a)
OneToMany
-- 31
  • 9 (a)
OneToMany
-- 31
  • 9 (a)
OneToMany
-- 31
  • 8 (a)
OneToMany
-- 31
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii BX465203.3 31
  • 14 (a)
OneToMany
BX511252.1 31
  • 13 (a)
OneToMany
CR931813.1 31
  • 13 (a)
OneToMany
CU694254.1 31
  • 11 (a)
OneToMany
Species where no ortholog for ENSG00000213121 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000213121 Gene

ENSEMBL:
Gene Tree for ENSG00000213121 (if available)
TreeFam:
Gene Tree for ENSG00000213121 (if available)

Paralogs for ENSG00000213121 Gene

No data available for Paralogs for ENSG00000213121 Gene

Variants for ENSG00000213121 Gene

Variation tolerance for ENSG00000213121 Gene

Gene Damage Index Score: 1.96; 36.31% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000213121 Gene

Disorders for ENSG00000213121 Gene

No disorders were found for ENSG00000213121 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000213121 Gene

Publications for ENSG00000213121 Gene

No publications were found for ENSG00000213121 Gene.

No data available for Mastermind for ENSG00000213121 Gene

Products for ENSG00000213121 Gene

Sources for ENSG00000213121 Gene