ENSG00000212553 Gene (RNA Gene)

 

GC13M039857
GIFtS:
5
See more...

Aliases for ENSG00000212553 Gene

Subcategory (RNA class) for ENSG00000212553 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000212553 Gene

  • SNORD116-9L1 170
  • AL138702.1 5
  • SNODB1975 177
  • SNODB1991 177
  • RF00108 168

External Ids for ENSG00000212553 Gene

Previous GeneCards Identifiers for ENSG00000212553 Gene

  • GC13M039331
  • GC13M040431

Summaries for ENSG00000212553 Gene

GeneCards Summary for ENSG00000212553 Gene

ENSG00000212553 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000212553 Gene

  • Small nucleolar RNA SNORD116

Additional gene information for ENSG00000212553 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000212553 Gene

Genomics for ENSG00000212553 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000212553 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH13J039855 Enhancer 0.6 Ensembl ENCODE 600.7 +1.7 1728 0.9 SCRT2 POLR2A RCOR1 MAX GATA2 ENSG00000212553 AZU1P1 lnc-LHFPL6-8 piR-59297-148 COG6 FOXO1
GH13J039894 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -36.9 -36873 5.4 NFE2 GABPA NR2F2 RCOR1 TAL1 ETV1 YY1 JUN TCF12 KLF16 ENSG00000212553 piR-57460-144 piR-39858-143 COG6 FOXO1
GH13J040114 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9 -259.0 -258965 3.6 CREB1 GATAD2A ZNF629 JUND PKNOX1 PATZ1 IKZF2 ZNF501 TRIM22 ZNF600 lnc-COG6-5 lnc-COG6-6 ENSG00000212553 LOC107984569 lnc-COG6-7 COG6 LINC00548 LINC00598 FOXO1
GH13J039775 Enhancer 1.1 FANTOM5 Ensembl ENCODE 10.4 +79.3 79329 5 CEBPG CREB1 CTCF RELA GTF2F1 CEBPB RAD21 RELB JUND RUNX3 COG6 ENSG00000212553 RNY4P14 RF00019-027 piR-61101-149 FOXO1
GH13J040025 Enhancer 1 Ensembl ENCODE 9.9 -169.4 -169395 1.6 SP1 POLR2A BACH1 RELA TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED ENSG00000212553 lnc-COG6-7 piR-41525-157 COG6 FOXO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000212553 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000212553 Gene

Genomic Locations for ENSG00000212553 Gene
chr13:39,857,135-39,857,227
(GRCh38/hg38)
Size:
93 bases
Orientation:
Minus strand
chr13:40,431,272-40,431,364
(GRCh37/hg19)
Size:
93 bases
Orientation:
Minus strand

Genomic View for ENSG00000212553 Gene

Genes around ENSG00000212553 on UCSC Golden Path with GeneCards custom track
ENSG00000212553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000212553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000212553 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000212553 Gene

Proteins for ENSG00000212553 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000212553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000212553 Gene

Domains & Families for ENSG00000212553 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000212553 Gene

Function for ENSG00000212553 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000212553 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000212553 Gene

Localization for ENSG00000212553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000212553 Gene

Pathways & Interactions for ENSG00000212553 Gene

PathCards logo

SuperPathways for ENSG00000212553 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000212553 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000212553 Gene

Drugs & Compounds for ENSG00000212553 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000212553 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000212553 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006F4D3F_9606 snoRNA 93 3

Ensembl: ENST00000391251 (view in UCSC) ,

Rfam: RF00108,

snoDB: SNODB1975,

URS00008205D0_9606 snoRNA 87 2

snoDB: SNODB1991,

snOPY: Homo_sapiens300452,

ENSG00000212553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000212553 Gene

No ASD Table

Relevant External Links for ENSG00000212553 Gene

GeneLoc Exon Structure for
ENSG00000212553

No data available for mRNA/cDNA for ENSG00000212553 Gene

Expression for ENSG00000212553 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000212553 Gene

Orthologs for ENSG00000212553 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000212553 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD116 31
  • 98 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD116 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31
  • 74 (a)
 OneToMany
Cow
(Bos Taurus)
 Mammalia SNORD116 31 31 31 31 31 31 31 31 31 31 31
  • 68 (a)
 OneToMany
Species where no ortholog for ENSG00000212553 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000212553 Gene

ENSEMBL:
Gene Tree for ENSG00000212553 (if available)
TreeFam:
Gene Tree for ENSG00000212553 (if available)

Paralogs for ENSG00000212553 Gene

No data available for Paralogs for ENSG00000212553 Gene

Variants for ENSG00000212553 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000212553 Gene

Disorders for ENSG00000212553 Gene

No disorders were found for ENSG00000212553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000212553 Gene

Publications for ENSG00000212553 Gene

No publications were found for ENSG00000212553 Gene.

No data available for Mastermind for ENSG00000212553 Gene

Products for ENSG00000212553 Gene

Sources for ENSG00000212553 Gene