ENSG00000212539 Gene (RNA Gene)

 

GC18P056957
GIFtS:
5
See more...

Aliases for ENSG00000212539 Gene

Subcategory (RNA class) for ENSG00000212539 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000212539 Gene

  • AC012301.1 5
  • SNORD3@L48 170
  • SNODB1287 177
  • SNODB1429 177
  • RF00012 168

External Ids for ENSG00000212539 Gene

Previous GeneCards Identifiers for ENSG00000212539 Gene

  • GC18P052777
  • GC18P054628

Summaries for ENSG00000212539 Gene

GeneCards Summary for ENSG00000212539 Gene

ENSG00000212539 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000212539 Gene

Additional gene information for ENSG00000212539 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000212539 Gene

Genomics for ENSG00000212539 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000212539 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056986 Enhancer 0.9 Ensembl ENCODE 0.3 +30.0 30031 2.2 GATAD2A TEAD4 SOX13 ZSCAN4 POLR2A RXRB SP1 CEBPA CEBPB FOXA2 WDR7 ENSG00000212539 WDR7-OT1 BOD1L2 TXNL1
GH18J057002 Enhancer 0.9 Ensembl ENCODE 0.3 +46.9 46931 3.6 PRDM1 POLR2A IKZF2 PKNOX1 ARID3A DPF2 RELB RUNX3 ESR1 ZSCAN5C WDR7 WDR7-OT1 ENSG00000212539 BOD1L2 TXNL1
GH18J056992 Enhancer 0.6 Ensembl 0.3 +35.6 35631 0.6 ZNF629 NFE2 FOSL1 EP300 JUND ZNF366 PRDM6 ZNF664 ATF2 SP7 BOD1L2 WDR7 WDR7-OT1 ENSG00000212539 TXNL1
GH18J057017 Enhancer 0.7 ENCODE 0.2 +60.1 60107 0.5 ZIC2 ZNF776 ZSCAN4 IKZF2 POLR2A RCOR1 PKNOX1 RELA EED ARID3A WDR7-OT1 ENSG00000212539 BOD1L2 TXNL1 WDR7
GH18J056958 Enhancer 0.2 Ensembl 0.7 +2.0 2031 1 ENSG00000212539 WDR7-OT1 BOD1L2 TXNL1 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000212539 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000212539 Gene

Genomic Locations for ENSG00000212539 Gene
chr18:56,957,270-56,957,469
(GRCh38/hg38)
Size:
200 bases
Orientation:
Plus strand
chr18:54,624,501-54,624,699
(GRCh37/hg19)
Size:
199 bases
Orientation:
Plus strand

Genomic View for ENSG00000212539 Gene

Genes around ENSG00000212539 on UCSC Golden Path with GeneCards custom track
ENSG00000212539 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000212539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000212539 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000212539 Gene

Proteins for ENSG00000212539 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000212539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000212539 Gene

Domains & Families for ENSG00000212539 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000212539 Gene

Function for ENSG00000212539 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000212539 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000212539 Gene

Localization for ENSG00000212539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000212539 Gene

Pathways & Interactions for ENSG00000212539 Gene

PathCards logo

SuperPathways for ENSG00000212539 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000212539 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000212539 Gene

Drugs & Compounds for ENSG00000212539 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000212539 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000212539 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000072A96F_9606 snoRNA 200 3

Ensembl: ENST00000391237 (view in UCSC) ,

Rfam: RF00012,

snoDB: SNODB1287,

URS000082FF53_9606 snoRNA 199 2

snoDB: SNODB1429,

snOPY: Homo_sapiens300471,

ENSG00000212539 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000212539 Gene

No ASD Table

Relevant External Links for ENSG00000212539 Gene

GeneLoc Exon Structure for
ENSG00000212539

No data available for mRNA/cDNA for ENSG00000212539 Gene

Expression for ENSG00000212539 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000212539 Gene

mRNA expression in normal human tissues for ENSG00000212539 Gene
mRNA expression by GTEx for ENSG00000212539 Gene
genes like me logo Genes that share expression patterns with ENSG00000212539: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000212539 Gene

Orthologs for ENSG00000212539 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000212539 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U3 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia U3 31 31 31 31
  • 69 (a)
 ManyToMany
Species where no ortholog for ENSG00000212539 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000212539 Gene

ENSEMBL:
Gene Tree for ENSG00000212539 (if available)
TreeFam:
Gene Tree for ENSG00000212539 (if available)

Paralogs for ENSG00000212539 Gene

No data available for Paralogs for ENSG00000212539 Gene

Variants for ENSG00000212539 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000212539 Gene

Disorders for ENSG00000212539 Gene

No disorders were found for ENSG00000212539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000212539 Gene

Publications for ENSG00000212539 Gene

No publications were found for ENSG00000212539 Gene.

No data available for Mastermind for ENSG00000212539 Gene

Products for ENSG00000212539 Gene

Sources for ENSG00000212539 Gene