ENSG00000212397 Gene (RNA Gene)

 

GC11M112602
GIFtS:
4
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Aliases for ENSG00000212397 Gene

Data sources for ENSG00000212397 Gene:

Subcategory (RNA class) for ENSG00000212397 Gene

snoRNA

Aliases for ENSG00000212397 Gene

External Ids for ENSG00000212397 Gene

Previous GeneCards Identifiers for ENSG00000212397 Gene

  • GC11M111978
  • GC11M112473

Summaries for ENSG00000212397 Gene

GeneCards Summary for ENSG00000212397 Gene

ENSG00000212397 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000212397 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000212397 Gene

Genomics for ENSG00000212397 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000212397 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J112587 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.3 13341 2.6 CTCF REST CUX1 TRIM22 SMC3 RAD21 MAX TCF7 MTA3 GLIS1 NCAM1 ENSG00000212397 HSALNG0087207 LINC02763 PLET1
GH11J112583 Enhancer 0.9 ENCODE dbSUPER 0.4 +19.0 19019 0.2 SP1 BCL11A IRF4 EBF1 CBFB BHLHE40 BATF STAT5A NFATC1 IKZF1 HSALNG0087207 ENSG00000212397 LINC02763 PLET1 NCAM1
GH11J112578 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +21.4 21391 4.3 EBF1 CBFB BATF JUNB GATA2 EGR2 IKZF2 EED RUNX3 ETV6 LINC02762 HSALNG0087207 ENSG00000212397 LINC02763 PLET1 NCAM1
GH11J112590 Enhancer 0.4 Ensembl dbSUPER 0.4 +11.3 11251 0.8 GLIS1 ENSG00000212397 HSALNG0087207 LINC02763 PLET1 NCAM1
GH11J112584 Enhancer 0.4 Ensembl 0.4 +17.6 17551 0.6 CTCF SMC3 RAD21 LINC02762 ENSG00000212397 HSALNG0087207 LINC02763 PLET1 NCAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000212397 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000212397 Gene

Latest Assembly
chr11:112,602,354-112,602,452
(GRCh38/hg38)
Size:
99 bases
Orientation:
Minus strand

Previous Assembly
chr11:112,473,077-112,473,175
(GRCh37/hg19 by Ensembl)
Size:
99 bases
Orientation:
Minus strand

Genomic View for ENSG00000212397 Gene

Genes around ENSG00000212397 on UCSC Golden Path with GeneCards custom track
ENSG00000212397 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000212397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000212397 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000212397 Gene

Proteins for ENSG00000212397 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for ENSG00000212397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000212397 Gene

Domains & Families for ENSG00000212397 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000212397 Gene

Function for ENSG00000212397 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000212397 Gene

Localization for ENSG00000212397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000212397 Gene

Pathways & Interactions for ENSG00000212397 Gene

PathCards logo

SuperPathways for ENSG00000212397 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000212397 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000212397 Gene

Drugs & Compounds for ENSG00000212397 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for ENSG00000212397 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000212397 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000081B404_9606 snoRNA 99 3

Ensembl: ENST00000391095 (view in UCSC) ,

snoDB: SNODB1392,

snOPY: Homo_sapiens300104,

ENSG00000212397 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000212397 Gene

No ASD Table

Relevant External Links for ENSG00000212397 Gene

GeneLoc Exon Structure for
ENSG00000212397

No data available for mRNA/cDNA for ENSG00000212397 Gene

Expression for ENSG00000212397 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000212397 Gene

Orthologs for ENSG00000212397 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000212397 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia snosnR66 31
  • 99 (a)
 OneToOne
Species where no ortholog for ENSG00000212397 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000212397 Gene

ENSEMBL:
Gene Tree for ENSG00000212397 (if available)
TreeFam:
Gene Tree for ENSG00000212397 (if available)

Paralogs for ENSG00000212397 Gene

No data available for Paralogs for ENSG00000212397 Gene

Variants for ENSG00000212397 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000212397 Gene

Disorders for ENSG00000212397 Gene

No disorders were found for ENSG00000212397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000212397 Gene

Publications for ENSG00000212397 Gene

No publications were found for ENSG00000212397 Gene.

No data available for Mastermind for ENSG00000212397 Gene

Products for ENSG00000212397 Gene

Sources for ENSG00000212397 Gene