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Aliases for ENSG00000207130 Gene

Subcategory (RNA class) for ENSG00000207130 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for ENSG00000207130 Gene

  • RF00399 5

External Ids for ENSG00000207130 Gene

ORGUL Members for ENSG00000207130 Gene

Previous GeneCards Identifiers for ENSG00000207130 Gene

  • GC03M129918
  • GC03M128433

Summaries for ENSG00000207130 Gene

GeneCards Summary for ENSG00000207130 Gene

ENSG00000207130 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000207130 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA24: ACA24 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

View fRNAdb secondary structures for ENSG00000207130

Additional gene information for ENSG00000207130 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000207130 Gene

Genomics for ENSG00000207130 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000207130 Gene

Promoters and enhancers for ENSG00000207130 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J128714 Enhancer 0.7 ENCODE dbSUPER 650.7 -0.7 -687 0.8 CTCF POLR2A IKZF1 EED EBF1 IKZF2 RUNX3 ENSG00000207130 GC03M128715 LOC653712 RAB7A
GH03J128845 Enhancer 1.5 FANTOM5 Ensembl ENCODE 10.2 -131.3 -131314 2 HDGF ATF1 FOXA2 ARID4B SIN3A ZNF48 GLIS2 ZNF143 ATF7 RUNX3 GC03P129859 GC03P129864 GC03P129871 GC03P129874 GC03P129889 GC03P129890 GC03P129892 GC03M128920 GC03M128935 GC03M128938
GH03J128801 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 -89.9 -89885 5.6 HDAC1 YBX3 ATF1 TAF9B ZBTB40 BATF IRF4 ZSCAN5C ZNF143 FOS LOC653712 ENSG00000250796 ENSG00000207130 CNBP ENSG00000261159 RAB7A ACAD9 RPS15AP16 PIR59714
GH03J128785 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 -73.6 -73595 5 CTCF JUN MAX BATF BRCA1 FOSL1 GATA3 GLIS2 ZNF316 POLR2A ENSG00000250796 LOC653712 ENSG00000207130 ACAD9 RAB7A RN7SL698P RPS15AP16
GH03J128793 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 -79.8 -79807 2.3 CTCF IRF2 SAP130 ARID4B EBF1 RAD21 RFX5 ZNF507 YY1 POLR2A LOC653712 ENSG00000207130 ENSG00000250796 RAB7A ACAD9 RPS15AP16 RN7SL698P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000207130 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000207130 Gene

Genomic Locations for ENSG00000207130 Gene
chr3:128,714,571-128,714,705
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr3:128,433,414-128,433,548
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for ENSG00000207130 Gene

Genes around ENSG00000207130 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000207130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000207130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000207130 Gene

ORGUL Member Location for ENSG00000207130 gene

No data available for RefSeq DNA sequence for ENSG00000207130 Gene

Proteins for ENSG00000207130 Gene

Post-translational modifications for ENSG00000207130 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000207130 Gene

Domains & Families for ENSG00000207130 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000207130 Gene

Function for ENSG00000207130 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000207130 Gene

Localization for ENSG00000207130 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000207130 Gene

Pathways & Interactions for ENSG00000207130 Gene

SuperPathways for ENSG00000207130 Gene

No Data Available

Interacting Proteins for ENSG00000207130 Gene

Gene Ontology (GO) - Biological Process for ENSG00000207130 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000207130 Gene

Drugs & Compounds for ENSG00000207130 Gene

No Compound Related Data Available

Transcripts for ENSG00000207130 Gene

fRNAdb Secondary structures for ENSG00000207130 Gene

  • RF00399;SNORA24;ADDF010491320.1/99-2

mRNA/cDNA for ENSG00000207130 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000207130 Gene

No ASD Table

Relevant External Links for ENSG00000207130 Gene

GeneLoc Exon Structure for
ENSG00000207130

Expression for ENSG00000207130 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000207130 Gene

genes like me logo Genes that share expression patterns with ENSG00000207130: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000207130 Gene

Orthologs for ENSG00000207130 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000207130 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA24 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA24 34
  • 95 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA24 34
  • 88 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA24 34
  • 87 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA24 34 34 34 34
  • 80 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24252 34
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA24 34
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA24 34
  • 69 (a)
OneToMany
Species where no ortholog for ENSG00000207130 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000207130 Gene

ENSEMBL:
Gene Tree for ENSG00000207130 (if available)
TreeFam:
Gene Tree for ENSG00000207130 (if available)

Paralogs for ENSG00000207130 Gene

No data available for Paralogs for ENSG00000207130 Gene

Variants for ENSG00000207130 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000207130 Gene

Disorders for ENSG00000207130 Gene

No disorders were found for ENSG00000207130 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000207130 Gene

Publications for ENSG00000207130 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for ENSG00000207130 Gene

Sources for ENSG00000207130 Gene

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