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Aliases for ENSG00000207002 Gene

Subcategory (RNA class) for ENSG00000207002 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for ENSG00000207002 Gene

  • RF00392 5

External Ids for ENSG00000207002 Gene

ORGUL Members for ENSG00000207002 Gene

Previous GeneCards Identifiers for ENSG00000207002 Gene

  • GC03P125017
  • GC03P123532

Summaries for ENSG00000207002 Gene

GeneCards Summary for ENSG00000207002 Gene

ENSG00000207002 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000207002 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA5: ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

View fRNAdb secondary structures for ENSG00000207002

Additional gene information for ENSG00000207002 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000207002 Gene

Genomics for ENSG00000207002 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000207002 Gene

Promoters and enhancers for ENSG00000207002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J123813 Enhancer 0.8 ENCODE dbSUPER 650.7 0.0 -39 1.6 LEF1 TEAD4 TAL1 CBFA2T3 ZNF7 TCF12 NCOR1 CBFA2T2 FOS ZSCAN29 GC03P123815 ENSG00000207002 KALRN MYLK LOC105369194
GH03J123748 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -59.7 -59749 11.2 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 SLC30A9 ENSG00000207002 MYLK GC03P123815 LOC105369194
GH03J123788 Promoter/Enhancer 1.3 EPDnew ENCODE dbSUPER 11.1 -22.6 -22559 6.1 JUN MAFG GATA3 JUND ZNF316 POLR2A SCRT2 NFE2 FOS ZBTB33 MYLK ENSG00000207002 GC03P123815 LOC105369194
GH03J123738 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.8 -73.6 -73565 3.6 SRF JUND FOS PRDM1 MYLK-AS2 MYLK ENSG00000207002 LOC105369194 GC03P123815
GH03J123843 Enhancer 0.6 ENCODE dbSUPER 10.8 +29.7 29692 1.4 RFX1 BMI1 ENSG00000207002 KALRN MYLK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000207002 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000207002 Gene

Genomic Locations for ENSG00000207002 Gene
chr3:123,814,077-123,814,207
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand
chr3:123,532,924-123,533,054
(GRCh37/hg19)

Genomic View for ENSG00000207002 Gene

Genes around ENSG00000207002 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000207002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000207002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000207002 Gene

ORGUL Member Location for ENSG00000207002 gene

No data available for RefSeq DNA sequence for ENSG00000207002 Gene

Proteins for ENSG00000207002 Gene

Post-translational modifications for ENSG00000207002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000207002 Gene

Domains & Families for ENSG00000207002 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000207002 Gene

Function for ENSG00000207002 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000207002 Gene

Localization for ENSG00000207002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000207002 Gene

Pathways & Interactions for ENSG00000207002 Gene

SuperPathways for ENSG00000207002 Gene

No Data Available

Interacting Proteins for ENSG00000207002 Gene

Gene Ontology (GO) - Biological Process for ENSG00000207002 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000207002 Gene

Drugs & Compounds for ENSG00000207002 Gene

No Compound Related Data Available

Transcripts for ENSG00000207002 Gene

fRNAdb Secondary structures for ENSG00000207002 Gene

  • RF00392;SNORA5;ADDF013573918.1/264-342

mRNA/cDNA for ENSG00000207002 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000207002 Gene

No ASD Table

Relevant External Links for ENSG00000207002 Gene

GeneLoc Exon Structure for
ENSG00000207002

Expression for ENSG00000207002 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000207002 Gene

genes like me logo Genes that share expression patterns with ENSG00000207002: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000207002 Gene

Orthologs for ENSG00000207002 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000207002 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA5 34
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA5 34
  • 73 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25517 34
  • 66 (a)
ManyToMany
Gm22447 34
  • 61 (a)
ManyToMany
Gm24829 34
  • 60 (a)
ManyToMany
Gm23568 34
  • 60 (a)
ManyToMany
Gm23561 34
  • 59 (a)
ManyToMany
Gm24568 34
  • 58 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA5 34
  • 64 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA5 34
  • 63 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA5 34
  • 59 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA5 34
  • 62 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA5 34
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA5 34 34 34 34
  • 58 (a)
ManyToMany
Species where no ortholog for ENSG00000207002 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000207002 Gene

ENSEMBL:
Gene Tree for ENSG00000207002 (if available)
TreeFam:
Gene Tree for ENSG00000207002 (if available)

Paralogs for ENSG00000207002 Gene

No data available for Paralogs for ENSG00000207002 Gene

Variants for ENSG00000207002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000207002 Gene

Disorders for ENSG00000207002 Gene

No disorders were found for ENSG00000207002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000207002 Gene

Publications for ENSG00000207002 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for ENSG00000207002 Gene

Sources for ENSG00000207002 Gene

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