Aliases for ENSG00000204850 Gene

Subcategory (RNA class) for ENSG00000204850 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for ENSG00000204850 Gene

  • Novel Transcript, Antisense To PPP5D1 5
  • AC011484.1 5

External Ids for ENSG00000204850 Gene

Previous GeneCards Identifiers for ENSG00000204850 Gene

  • GC19P051690
  • GC19P046997

Summaries for ENSG00000204850 Gene

GeneCards Summary for ENSG00000204850 Gene

ENSG00000204850 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000204850 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000204850 Gene

Genomics for ENSG00000204850 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000204850 Gene

Promoters and enhancers for ENSG00000204850 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046494 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 750.6 +1.5 1485 1.3 POLR2A RFX1 ZNF311 NRF1 VEZF1 ENSG00000204850 PNMA8B lnc-PNMA8B-1 PNMA8A DM1-AS ENSG00000259605 PPP5D1
GH19J046492 Promoter/Enhancer 0.7 Ensembl ENCODE 750.6 -1.0 -999 1.4 EZH2 POLR2A ENSG00000204850 PNMA8A PNMA8B lnc-PNMA8B-1 lnc-PNMA8B-2 PPP5D1
GH19J046395 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 -98.9 -98907 1.2 CTCF ZNF362 MYC CC2D1A MAX RAD21 ZNF280D ELF3 ZNF384 ELF1 PNMA8A ENSG00000204850 PNMA8B ENSG00000269151 lnc-CCDC8-1 LOC105372426
GH19J046403 Enhancer 1 ENCODE dbSUPER 12.5 -89.6 -89647 2.4 GTF3C2 RBPJ MYC L3MBTL2 MAX POLR2A ZNF148 SP1 TFE3 ELF1 LOC105372426 lnc-CCDC8-1 PPP5C ZC3H4 FBXO46 CCDC61 ENSG00000269148 ENSG00000268810 ENSG00000204850 PNMA8B
GH19J046402 Enhancer 0.7 ENCODE 12.2 -92.1 -92099 0.2 CTCF RBM39 RAD21 PRDM1 PKNOX1 REST PRDM10 ZNF512 TRIM22 ZNF143 ZC3H4 ENSG00000268810 CCDC61 ENSG00000269148 IRF2BP1 FBXO46 PNMA8A PNMA8B ENSG00000204850 CCDC9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000204850 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000204850 Gene

Genomic Locations for ENSG00000204850 Gene
chr19:46,494,508-46,496,502
(GRCh38/hg38)
Size:
1,995 bases
Orientation:
Plus strand
chr19:46,997,765-46,999,755
(GRCh37/hg19)
Size:
1,991 bases
Orientation:
Plus strand

Genomic View for ENSG00000204850 Gene

Genes around ENSG00000204850 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000204850 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000204850 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000204850 Gene

Proteins for ENSG00000204850 Gene

Post-translational modifications for ENSG00000204850 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000204850 Gene

Domains & Families for ENSG00000204850 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000204850 Gene

Function for ENSG00000204850 Gene

Phenotypes From GWAS Catalog for ENSG00000204850 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000204850 Gene

Localization for ENSG00000204850 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000204850 Gene

Pathways & Interactions for ENSG00000204850 Gene

PathCards logo

SuperPathways for ENSG00000204850 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000204850 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000204850 Gene

Drugs & Compounds for ENSG00000204850 Gene

No Compound Related Data Available

Transcripts for ENSG00000204850 Gene

mRNA/cDNA for ENSG00000204850 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000204850 Gene

No ASD Table

Relevant External Links for ENSG00000204850 Gene

GeneLoc Exon Structure for
ENSG00000204850

Expression for ENSG00000204850 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000204850 Gene

mRNA expression in normal human tissues for ENSG00000204850 Gene
genes like me logo Genes that share expression patterns with ENSG00000204850: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000204850 Gene

Orthologs for ENSG00000204850 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000204850 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 33
  • 100 (a)
OneToOne
Species where no ortholog for ENSG00000204850 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000204850 Gene

ENSEMBL:
Gene Tree for ENSG00000204850 (if available)
TreeFam:
Gene Tree for ENSG00000204850 (if available)

Paralogs for ENSG00000204850 Gene

No data available for Paralogs for ENSG00000204850 Gene

Variants for ENSG00000204850 Gene

Variation tolerance for ENSG00000204850 Gene

Gene Damage Index Score: 0.01; 0.32% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000204850 Gene

Disorders for ENSG00000204850 Gene

No disorders were found for ENSG00000204850 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000204850 Gene

Publications for ENSG00000204850 Gene

No publications were found for ENSG00000204850 Gene.

No data available for External Links for ENSG00000204850 Gene

Products for ENSG00000204850 Gene

Sources for ENSG00000204850 Gene