Aliases for ENSG00000204003 Gene

Aliases for ENSG00000204003 Gene

  • Lipocln_cytosolic_FA-Bd_dom Domain-Containing Protein 13
  • Novel Protein 5
  • AL355987.1 5

External Ids for ENSG00000204003 Gene

Previous GeneCards Identifiers for ENSG00000204003 Gene

  • GC09M139634
  • GC09M139635

Summaries for ENSG00000204003 Gene

GeneCards Summary for ENSG00000204003 Gene

ENSG00000204003 is a Protein Coding gene. An important paralog of this gene is LCN6.

Additional gene information for ENSG00000204003 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000204003 Gene

Genomics for ENSG00000204003 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000204003 Gene

Promoters and enhancers for ENSG00000204003 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J136748 Promoter/Enhancer 0.6 EPDnew ENCODE 500.7 -0.6 -597 1.2 ESRRA ENSG00000204003 LCN6 LCN8 LCN15 LOC100128593 lnc-LCN8-1
GH09J136749 Enhancer 0.3 ENCODE 500.7 -1.6 -1551 0.2 SPI1 POLR2A ENSG00000204003 LCN6 lnc-LCN8-1
GH09J136739 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +6.5 6475 2.2 CTCF ZIC2 ZBTB25 TGIF2 MYC EZH2 TEAD1 ZBTB26 ZSCAN9 NFIC LCN10 LCN8 lnc-LCN10-2 ENSG00000204003 ENSG00000274356
GH09J136747 Promoter 0.8 Ensembl 0.7 +2.7 2652 0.4 CTBP1 NR2F1 EZH2 ZBTB7A DPF2 GABPB1 EGR1 ZNF316 IKZF1 HDAC1 LOC100128593 MIR6722 lnc-LCN10-2 ENSG00000204003 LCN10 LCN6
GH09J136746 Promoter 0.7 EPDnew 0.7 +2.4 2399 0.1 CTBP1 NR2F1 ZBTB7A DPF2 GABPB1 EGR1 IKZF1 HDAC1 ZBTB2 CBFA2T3 LCN6 LOC100128593 MIR6722 lnc-LCN10-2 ENSG00000204003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000204003 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000204003 Gene

Genomic Locations for ENSG00000204003 Gene
chr9:136,738,167-136,748,453
(GRCh38/hg38)
Size:
10,287 bases
Orientation:
Minus strand
chr9:139,632,619-139,642,905
(GRCh37/hg19)
Size:
10,287 bases
Orientation:
Minus strand

Genomic View for ENSG00000204003 Gene

Genes around ENSG00000204003 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000204003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000204003 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000204003 Gene

Proteins for ENSG00000204003 Gene

  • Protein details for ENSG00000204003 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H7C1C5-H7C1C5_HUMAN
    Recommended name:
    Lipocln_cytosolic_FA-bd_dom domain-containing protein
    Protein Accession:
    H7C1C5

    Protein attributes for ENSG00000204003 Gene

    Size:
    153 amino acids
    Molecular mass:
    17058 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ENSG00000204003 Gene

Post-translational modifications for ENSG00000204003 Gene

No Post-translational modifications

Other Protein References for ENSG00000204003 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ENSG00000204003 Gene

Domains & Families for ENSG00000204003 Gene

Gene Families for ENSG00000204003 Gene

Unknown:
  • Belongs to the calycin superfamily. Lipocalin family.

Protein Domains for ENSG00000204003 Gene

genes like me logo Genes that share domains with ENSG00000204003: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000204003 Gene

Function for ENSG00000204003 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000204003 Gene

Localization for ENSG00000204003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000204003 Gene

Pathways & Interactions for ENSG00000204003 Gene

PathCards logo

SuperPathways for ENSG00000204003 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000204003 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000204003 Gene

Drugs & Compounds for ENSG00000204003 Gene

No Compound Related Data Available

Transcripts for ENSG00000204003 Gene

mRNA/cDNA for ENSG00000204003 Gene

2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000204003 Gene

No ASD Table

Relevant External Links for ENSG00000204003 Gene

GeneLoc Exon Structure for
ENSG00000204003

Expression for ENSG00000204003 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000204003 Gene

Orthologs for ENSG00000204003 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000204003 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 31
  • 62 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Lcn6 31
  • 62 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 31
  • 55 (a)
OneToMany
Species where no ortholog for ENSG00000204003 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000204003 Gene

ENSEMBL:
Gene Tree for ENSG00000204003 (if available)
TreeFam:
Gene Tree for ENSG00000204003 (if available)

Paralogs for ENSG00000204003 Gene

Paralogs for ENSG00000204003 Gene

genes like me logo Genes that share paralogs with ENSG00000204003: view

Variants for ENSG00000204003 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000204003 Gene

Disorders for ENSG00000204003 Gene

No disorders were found for ENSG00000204003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000204003 Gene

Publications for ENSG00000204003 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 13 54

No data available for Mastermind for ENSG00000204003 Gene

Products for ENSG00000204003 Gene

Sources for ENSG00000204003 Gene