Aliases for ENSG00000203643 Gene

Subcategory (RNA class) for ENSG00000203643 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000203643 Gene

  • Novel Transcript 5
  • NONHSAG027018.2 91
  • HSALNG0013070 164
  • Lnc-NTSR2-1 165
  • AC012456.1 5

External Ids for ENSG00000203643 Gene

Previous GeneCards Identifiers for ENSG00000203643 Gene

  • GC03P139961
  • GC02M011861

Summaries for ENSG00000203643 Gene

GeneCards Summary for ENSG00000203643 Gene

ENSG00000203643 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000203643 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000203643 Gene

Genomics for ENSG00000203643 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000203643 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J011722 Enhancer 0.7 Ensembl 600.7 +1.3 1321 0.6 CEBPG GATAD2A TFE3 SP1 CEBPA SOX13 TCF7 FOXA2 ATF3 YY1 ENSG00000203643 LOC101929752 NONHSAG027019.2 LOC100506405 LPIN1 TRIB2
GH02J011724 Promoter 0.4 EPDnew 600.7 -0.1 -109 0.1 GLIS1 ENSG00000203643 LOC101929752 NONHSAG027019.2 LPIN1 TRIB2
GH02J011742 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -22.7 -22716 9.4 SP1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 LEF1 IKZF1 NFKBIZ LPIN1 ENSG00000230790 ENSG00000203643 E2F6 L13714-248 NONHSAG027019.2 TRIB2
GH02J011696 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.7 +26.4 26422 4.8 GATAD2A TFE3 RCOR2 GABPA MNT SOX13 MGA SP1 ESR1 ZBTB26 LPIN1 ENSG00000203643 ENSG00000230790 NTSR2 CDK8P1 E2F6 LOC100506405
GH02J011752 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.9 -29.7 -29696 2.3 SP1 ZNF629 BACH1 JUND LARP7 MTA2 RELA ZIC2 PKNOX1 TCF12 L13714-248 LPIN1 ENSG00000203643 piR-53431-359 NONHSAG027019.2 TRIB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000203643 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000203643 Gene

Genomic Locations for ENSG00000203643 Gene
chr2:11,720,441-11,724,222
(GRCh38/hg38)
Size:
3,782 bases
Orientation:
Minus strand

Genomic View for ENSG00000203643 Gene

Genes around ENSG00000203643 on UCSC Golden Path with GeneCards custom track
ENSG00000203643 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000203643 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000203643 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000203643 Gene

Proteins for ENSG00000203643 Gene

Post-translational modifications for ENSG00000203643 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000203643 Gene

Domains & Families for ENSG00000203643 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000203643 Gene

Function for ENSG00000203643 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000203643 Gene

Localization for ENSG00000203643 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000203643 Gene

Pathways & Interactions for ENSG00000203643 Gene

PathCards logo

SuperPathways for ENSG00000203643 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000203643 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000203643 Gene

Drugs & Compounds for ENSG00000203643 Gene

No Compound Related Data Available

Transcripts for ENSG00000203643 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000203643 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043E7F8_9606 lncRNA 1605 4

Ensembl: ENST00000430048 (view in UCSC) ,

LncBook: HSALNT0027515,

LNCipedia: lnc-NTSR2-1:1,

NONCODE: NONHSAT069189.2,

URS00008BF4E2_9606 lncRNA 734 3

LncBook: HSALNT0027514,

LNCipedia: lnc-NTSR2-1:2,

NONCODE: NONHSAT069188.2,

URS00008BA411_9606 lncRNA 902 2

LNCipedia: lnc-NTSR2-1:3,

NONCODE: NONHSAT069187.2,

ENSG00000203643 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000203643 Gene

No ASD Table

Relevant External Links for ENSG00000203643 Gene

GeneLoc Exon Structure for
ENSG00000203643

No data available for mRNA/cDNA for ENSG00000203643 Gene

Expression for ENSG00000203643 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000203643 Gene

Orthologs for ENSG00000203643 Gene

Evolution for ENSG00000203643 Gene

ENSEMBL:
Gene Tree for ENSG00000203643 (if available)
TreeFam:
Gene Tree for ENSG00000203643 (if available)

No data available for Orthologs for ENSG00000203643 Gene

Paralogs for ENSG00000203643 Gene

No data available for Paralogs for ENSG00000203643 Gene

Variants for ENSG00000203643 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000203643 Gene

Disorders for ENSG00000203643 Gene

No disorders were found for ENSG00000203643 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000203643 Gene

Publications for ENSG00000203643 Gene

No publications were found for ENSG00000203643 Gene.

No data available for Mastermind for ENSG00000203643 Gene

Products for ENSG00000203643 Gene

Sources for ENSG00000203643 Gene