Aliases for ENSG00000202498 Gene

Subcategory (RNA class) for ENSG00000202498 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000202498 Gene

  • SNORD116-20 170
  • AC092799.1 5
  • SNODB964 177
  • RF00108 168

External Ids for ENSG00000202498 Gene

Previous GeneCards Identifiers for ENSG00000202498 Gene

  • GC01M212192
  • GC01M213871
  • GC01M215803

Summaries for ENSG00000202498 Gene

GeneCards Summary for ENSG00000202498 Gene

ENSG00000202498 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000202498 Gene

  • Small nucleolar RNA SNORD116

Additional gene information for ENSG00000202498 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000202498 Gene

Genomics for ENSG00000202498 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000202498 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J215631 Enhancer 0.5 Ensembl 600.7 -1.6 -1584 1 ZNF692 FOXA1 ZIC2 NFIC ZFHX2 NFIB NFIA EGR2 NR3C1 ENSG00000202498 KCTD3 piR-61240-019 USH2A
GH01J215635 Enhancer 1 Ensembl ENCODE 0.4 -6.4 -6354 2.5 CEBPG REST FOXA1 RXRB SP1 CEBPA CEBPB DPF2 ZBTB26 FOXA2 ENSG00000202498 piR-61240-019 KCTD3 USH2A
GH01J215651 Enhancer 0.7 UCNEbase Ensembl 0.4 -21.0 -20984 1.4 SP1 NR2F2 HNF4A ENSG00000202498 piR-61240-019 KCTD3 USH2A
GH01J215665 Enhancer 0.8 FANTOM5 Ensembl 0.3 -35.3 -35284 0.4 TCF12 IKZF2 DPF2 EGR1 CEBPB GATAD2B FOS ARNT NBN IKZF1 ENSG00000202498 piR-61240-019 KCTD3 USH2A
GH01J215647 Enhancer 0.6 Ensembl 0.4 -17.9 -17884 1.2 FOXA2 YY1 RFX5 STAT5A TAL1 NFIL3 TCF12 MAX HLF ZNF133 ENSG00000202498 piR-61240-019 KCTD3 USH2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000202498 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000202498 Gene

Genomic Locations for ENSG00000202498 Gene
chr1:215,630,026-215,630,117
(GRCh38/hg38)
Size:
92 bases
Orientation:
Minus strand
chr1:215,803,368-215,803,459
(GRCh37/hg19)
Size:
92 bases
Orientation:
Minus strand

Genomic View for ENSG00000202498 Gene

Genes around ENSG00000202498 on UCSC Golden Path with GeneCards custom track
ENSG00000202498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000202498 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000202498 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000202498 Gene

Proteins for ENSG00000202498 Gene

Post-translational modifications for ENSG00000202498 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000202498 Gene

Domains & Families for ENSG00000202498 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000202498 Gene

Function for ENSG00000202498 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000202498 Gene

Localization for ENSG00000202498 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000202498 Gene

Pathways & Interactions for ENSG00000202498 Gene

PathCards logo

SuperPathways for ENSG00000202498 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000202498 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000202498 Gene

Drugs & Compounds for ENSG00000202498 Gene

No Compound Related Data Available

Transcripts for ENSG00000202498 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000202498 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D8D58_9606 snoRNA 92 4

Ensembl: ENST00000365628 (view in UCSC) ,

Rfam: RF00108,

snoDB: SNODB964,

snOPY: Homo_sapiens300678,

ENSG00000202498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000202498 Gene

No ASD Table

Relevant External Links for ENSG00000202498 Gene

GeneLoc Exon Structure for
ENSG00000202498

No data available for mRNA/cDNA for ENSG00000202498 Gene

Expression for ENSG00000202498 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000202498 Gene

genes like me logo Genes that share expression patterns with ENSG00000202498: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000202498 Gene

Orthologs for ENSG00000202498 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for ENSG00000202498 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD116 31
  • 73 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm22373 31
  • 56 (a)
ManyToMany
Species where no ortholog for ENSG00000202498 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000202498 Gene

ENSEMBL:
Gene Tree for ENSG00000202498 (if available)
TreeFam:
Gene Tree for ENSG00000202498 (if available)

Paralogs for ENSG00000202498 Gene

No data available for Paralogs for ENSG00000202498 Gene

Variants for ENSG00000202498 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000202498 Gene

Disorders for ENSG00000202498 Gene

No disorders were found for ENSG00000202498 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000202498 Gene

Publications for ENSG00000202498 Gene

No publications were found for ENSG00000202498 Gene.

No data available for Mastermind for ENSG00000202498 Gene

Products for ENSG00000202498 Gene

Sources for ENSG00000202498 Gene