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ENSG00000202476 Gene(RNA Gene)

 

GCID:
GC16M030465
GIFtS:
6
Genes Participants
UDN Logo

Aliases for ENSG00000202476 Gene

Subcategory (RNA class) for ENSG00000202476 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for ENSG00000202476 Gene

  • RF00019 5

External Ids for ENSG00000202476 Gene

ORGUL Members for ENSG00000202476 Gene

Previous GeneCards Identifiers for ENSG00000202476 Gene

  • GC16M030372

Summaries for ENSG00000202476 Gene

GeneCards Summary for ENSG00000202476 Gene

ENSG00000202476 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for ENSG00000202476 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

Additional gene information for ENSG00000202476 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000202476 Gene

Genomics for ENSG00000202476 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000202476 Gene

Promoters and enhancers for ENSG00000202476 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J030457 Enhancer 1.1 Ensembl ENCODE 0.7 -4.6 -4592 2.9 HDGF PKNOX1 ARID4B DMAP1 IRF4 ZNF48 SLC30A9 ZNF207 ZNF143 ATF7 PRRT2 SPN PYCARD C16orf54 SMG1P5 ENSG00000260487 NPIPB12 YPEL3 CDIPTOSP ENSG00000261332
GH16J030444 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE 0.4 +7.7 7675 4.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC MEF2D SSRP1 SEPHS2 SETD1A ZNF689 RNF40 LOC730183 ZNF646 FBRS LOC647086 ZNF688 MIR762HG
GH16J030451 Enhancer 0.8 ENCODE 0.7 +4.8 4842 0.2 ELF3 MLX ARID4B THRB RARA TCF12 ZNF614 CREM THAP11 MIXL1 SEPHS2 ENSG00000202476
GH16J030449 Enhancer 0.7 ENCODE 0.7 +4.2 4172 0.2 CTCF ZNF384 RAD21 SLC30A9 CC2D1A ZNF664 ZNF213 EED ZNF143 SMC3 ENSG00000202476 SEPHS2
GH16J030450 Enhancer 0.6 ENCODE 0.7 +3.2 3245 1.1 SMARCA5 CTCF ZNF644 PPARG RARA RCOR2 MLLT1 KDM1A NR2F6 ENSG00000222701 ITGAL SNORA80C ZNF689 ENSG00000260304 CDIPTOSP ENSG00000202476 SEPHS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000202476 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000202476 Gene

Genomic Locations for ENSG00000202476 Gene
chr16:30,453,997-30,454,097
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand
chr16:30,465,318-30,465,418
(GRCh37/hg19)

Genomic View for ENSG00000202476 Gene

Genes around ENSG00000202476 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000202476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000202476 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

ORGUL Member Location for ENSG00000202476 Gene

ORGUL Member Location for ENSG00000202476 gene

No data available for RefSeq DNA sequence for ENSG00000202476 Gene

Proteins for ENSG00000202476 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000202476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000202476 Gene

Domains & Families for ENSG00000202476 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000202476 Gene

Function for ENSG00000202476 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000202476 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000202476 Gene

Localization for ENSG00000202476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000202476 Gene

Pathways & Interactions for ENSG00000202476 Gene

SuperPathways for ENSG00000202476 Gene

PathCards logo More details on SuperPathways for ENSG00000202476
No Data Available

Interacting Proteins for ENSG00000202476 Gene

Gene Ontology (GO) - Biological Process for ENSG00000202476 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000202476 Gene

Drugs & Compounds for ENSG00000202476 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000202476 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000202476 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000202476 Gene

No ASD Table

Relevant External Links for ENSG00000202476 Gene

GeneLoc Exon Structure for
ENSG00000202476

Expression for ENSG00000202476 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000202476 Gene

mRNA expression in normal human tissues for ENSG00000202476 Gene
mRNA expression by GTEx for ENSG00000202476 Gene
genes like me logo Genes that share expression patterns with ENSG00000202476: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000202476 Gene

Orthologs for ENSG00000202476 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000202476 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia Y_RNA 34
  • 98 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia Y_RNA 34
  • 80 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia Y_RNA 34
  • 69 (a)
 ManyToMany
Species where no ortholog for ENSG00000202476 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000202476 Gene

ENSEMBL:
Gene Tree for ENSG00000202476 (if available)
TreeFam:
Gene Tree for ENSG00000202476 (if available)

Paralogs for ENSG00000202476 Gene

No data available for Paralogs for ENSG00000202476 Gene

Variants for ENSG00000202476 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000202476 Gene

Disorders for ENSG00000202476 Gene

No disorders were found for ENSG00000202476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000202476 Gene

Publications for ENSG00000202476 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for ENSG00000202476 Gene

Sources for ENSG00000202476 Gene

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