Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000202332 Gene

Subcategory (RNA class) for ENSG00000202332 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for ENSG00000202332 Gene

  • RF00019 5

External Ids for ENSG00000202332 Gene

ORGUL Members for ENSG00000202332 Gene

Previous GeneCards Identifiers for ENSG00000202332 Gene

  • GC17P070940
  • GC17P073430

Summaries for ENSG00000202332 Gene

GeneCards Summary for ENSG00000202332 Gene

ENSG00000202332 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for ENSG00000202332 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

Additional gene information for ENSG00000202332 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000202332 Gene

Genomics for ENSG00000202332 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000202332 Gene

Promoters and enhancers for ENSG00000202332 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J075428 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.2 -2241 3.1 FOXA2 ARID4B SIN3A DMAP1 ZNF48 ETS1 FOS SP5 NFYC MIER2 TSEN54 CASKIN2 TMEM94 GRB2 NUP85 MIF4GD MYO15B LLGL2 MRPS7 ENSG00000202332
GH17J075435 Enhancer 0.7 ENCODE 0.7 +4.1 4092 1 HDAC1 KLF1 BMI1 ZBTB40 GTF3C2 ZFHX2 GATA3 CTBP1 POLR3A RCOR1 LLGL2 TSEN54 GGA3 UNK NUP85 NT5C ENSG00000266980 TMEM94 SRP68 CASKIN2
GH17J075425 Enhancer 1.2 Ensembl ENCODE 0.4 -5.2 -5240 1.7 HDGF MLX ARID4B SIN3A YBX1 ZBTB7B YY1 ZNF207 ZNF143 DEK UNK TRIM65 NAT9 ENSG00000267342 RN7SL573P TMEM94 NUP85 NT5C TSEN54 CASKIN2
GH17J075410 Enhancer 1.2 Ensembl ENCODE 0.3 -20.0 -20000 2 HDGF ARID4B SIN3A YBX1 ZNF2 ZNF48 SLC30A9 ZNF121 ZNF213 ZNF207 LOC101928343 NUP85 LLGL2 TMEM94 GGA3 MRPS7 LOC100287042 RNU6-938P ENSG00000202332
GH17J075440 Enhancer 0.6 ENCODE dbSUPER 0.4 +9.0 8988 0.9 ZNF239 KDM1A TEAD3 TMEM94 LLGL2 CASKIN2 TSEN54 GRB2 ENSG00000202332
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000202332 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000202332 Gene

Genomic Locations for ENSG00000202332 Gene
chr17:75,431,990-75,432,087
(GRCh38/hg38)
Size:
98 bases
Orientation:
Plus strand
chr17:73,428,071-73,428,168
(GRCh37/hg19)
Size:
98 bases
Orientation:
Plus strand

Genomic View for ENSG00000202332 Gene

Genes around ENSG00000202332 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000202332 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000202332 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000202332 Gene

ORGUL Member Location for ENSG00000202332 gene

No data available for RefSeq DNA sequence for ENSG00000202332 Gene

Proteins for ENSG00000202332 Gene

Post-translational modifications for ENSG00000202332 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000202332 Gene

Domains & Families for ENSG00000202332 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000202332 Gene

Function for ENSG00000202332 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000202332 Gene

Localization for ENSG00000202332 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000202332 Gene

Pathways & Interactions for ENSG00000202332 Gene

SuperPathways for ENSG00000202332 Gene

No Data Available

Interacting Proteins for ENSG00000202332 Gene

Gene Ontology (GO) - Biological Process for ENSG00000202332 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000202332 Gene

Drugs & Compounds for ENSG00000202332 Gene

No Compound Related Data Available

Transcripts for ENSG00000202332 Gene

mRNA/cDNA for ENSG00000202332 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000202332 Gene

No ASD Table

Relevant External Links for ENSG00000202332 Gene

GeneLoc Exon Structure for
ENSG00000202332

Expression for ENSG00000202332 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000202332 Gene

genes like me logo Genes that share expression patterns with ENSG00000202332: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000202332 Gene

Orthologs for ENSG00000202332 Gene

Evolution for ENSG00000202332 Gene

ENSEMBL:
Gene Tree for ENSG00000202332 (if available)
TreeFam:
Gene Tree for ENSG00000202332 (if available)

No data available for Orthologs for ENSG00000202332 Gene

Paralogs for ENSG00000202332 Gene

No data available for Paralogs for ENSG00000202332 Gene

Variants for ENSG00000202332 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000202332 Gene

Disorders for ENSG00000202332 Gene

No disorders were found for ENSG00000202332 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000202332 Gene

Publications for ENSG00000202332 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for ENSG00000202332 Gene

Sources for ENSG00000202332 Gene

Content
Loading form....