ENSG00000201827 Gene (RNA Gene)

 

GC03P133551
GIFtS:
6
See more...

Aliases for ENSG00000201827 Gene

Subcategory (RNA class) for ENSG00000201827 Gene

snoRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000201827 Gene

  • AC022296.1 5
  • SNODB1837 177
  • SNORA33L1 170
  • SNODB1375 177

External Ids for ENSG00000201827 Gene

Previous GeneCards Identifiers for ENSG00000201827 Gene

  • GC03P134753
  • GC03P133270

Summaries for ENSG00000201827 Gene

GeneCards Summary for ENSG00000201827 Gene

ENSG00000201827 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000201827 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000201827 Gene

Genomics for ENSG00000201827 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000201827 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH03J133549 Enhancer 0.3 Ensembl 600.7 -1.5 -1485 0.2 CEBPA NR2F6 ENSG00000201827 ENSG00000250983 lnc-TOPBP1-4 CDV3 BFSP2
GH03J133499 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -51.9 -51885 1 GATAD2A RCOR2 FOXA1 RXRB IRF2 SOX6 CEBPA SOX13 TCF7 CTBP1 ENSG00000250983 ENSG00000201827 BFSP2-AS1 piR-48820-069 CDV3 BFSP2
GH03J133473 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 -74.9 -74870 5.8 SP1 LARP7 RELA PKNOX1 RAD21 TCF12 IKZF2 TRIM22 ZNF600 EED RF00951-111 BFSP2 ENSG00000250983 ENSG00000201827 CDV3 INHCAP TOPBP1 BFSP2-AS1 piR-33614-198
GH03J133479 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.8 -71.0 -70974 1.6 CREB1 TEAD4 PRDM10 POLR2A ZIC2 SMAD5 IKZF2 ZNF341 PKNOX1 EED ENSG00000250983 ENSG00000201827 CDV3 INHCAP TOPBP1 BFSP2 RF00951-111 LOC391578 BFSP2-AS1
GH03J133523 Enhancer 0.6 Ensembl ENCODE 13.2 -25.6 -25586 4.4 HMBOX1 SPI1 NFIB RXRA FOS IKZF1 ENSG00000250983 ENSG00000201827 BFSP2-AS1 BFSP2 piR-48820-069 ENSG00000272832 CDV3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000201827 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000201827 Gene

Genomic Locations for ENSG00000201827 Gene
chr3:133,551,186-133,551,315
(GRCh38/hg38)
Size:
130 bases
Orientation:
Plus strand
chr3:133,270,030-133,270,159
(GRCh37/hg19)
Size:
130 bases
Orientation:
Plus strand

Genomic View for ENSG00000201827 Gene

Genes around ENSG00000201827 on UCSC Golden Path with GeneCards custom track
ENSG00000201827 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000201827 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201827 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000201827 Gene

Proteins for ENSG00000201827 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000201827 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201827 Gene

Domains & Families for ENSG00000201827 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000201827 Gene

Function for ENSG00000201827 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000201827 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201827 Gene

Localization for ENSG00000201827 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201827 Gene

Pathways & Interactions for ENSG00000201827 Gene

PathCards logo

SuperPathways for ENSG00000201827 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000201827 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000201827 Gene

Drugs & Compounds for ENSG00000201827 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000201827 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000201827 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000AA816B_9606 snoRNA 130 2

Ensembl: ENST00000364957 (view in UCSC) ,

snoDB: SNODB1837,

URS000081739E_9606 snoRNA 105 2

snoDB: SNODB1375,

snOPY: Homo_sapiens300300,

ENSG00000201827 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201827 Gene

No ASD Table

Relevant External Links for ENSG00000201827 Gene

GeneLoc Exon Structure for
ENSG00000201827

No data available for mRNA/cDNA for ENSG00000201827 Gene

Expression for ENSG00000201827 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000201827 Gene

mRNA expression in normal human tissues for ENSG00000201827 Gene
mRNA expression by GTEx for ENSG00000201827 Gene
genes like me logo Genes that share expression patterns with ENSG00000201827: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201827 Gene

Orthologs for ENSG00000201827 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000201827 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORA33 31 31
  • 92 (a)
 OneToMany
Cow
(Bos Taurus)
 Mammalia SNORA33 31 31
  • 65 (a)
 OneToMany
Dog
(Canis familiaris)
 Mammalia SNORA33 31
  • 65 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SNORA33 31
  • 57 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Gm24894 31
  • 55 (a)
 ManyToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA33 31
  • 48 (a)
 OneToMany
Chicken
(Gallus gallus)
 Aves SNORA33 31
  • 49 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORA33 31
  • 50 (a)
 OneToOne
Species where no ortholog for ENSG00000201827 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000201827 Gene

ENSEMBL:
Gene Tree for ENSG00000201827 (if available)
TreeFam:
Gene Tree for ENSG00000201827 (if available)

Paralogs for ENSG00000201827 Gene

No data available for Paralogs for ENSG00000201827 Gene

Variants for ENSG00000201827 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000201827 Gene

Disorders for ENSG00000201827 Gene

No disorders were found for ENSG00000201827 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201827 Gene

Publications for ENSG00000201827 Gene

No publications were found for ENSG00000201827 Gene.

No data available for Mastermind for ENSG00000201827 Gene

Products for ENSG00000201827 Gene

Sources for ENSG00000201827 Gene