Free for academic non-profit institutions. Other users need a Commercial license

ENSG00000201827 Gene(RNA Gene)

 

GCID:
GC03P133551
GIFtS:
7
Genes Participants
UDN Logo

Aliases for ENSG00000201827 Gene

Subcategory (RNA class) for ENSG00000201827 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000201827 Gene

  • RF00438 5

External Ids for ENSG00000201827 Gene

ORGUL Members for ENSG00000201827 Gene

Previous GeneCards Identifiers for ENSG00000201827 Gene

  • GC03P134753
  • GC03P133270

Summaries for ENSG00000201827 Gene

GeneCards Summary for ENSG00000201827 Gene

ENSG00000201827 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000201827 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000201827 Gene

Genomics for ENSG00000201827 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000201827 Gene

Promoters and enhancers for ENSG00000201827 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH03J133499 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 12 -51.8 -51764 0.2 ELF3 FOXA2 ARID4B THRB ZSCAN9 RARA ZNF614 CREM THAP11 SP5 ENSG00000250983 ENSG00000201827 BFSP2-AS1 GC03P133492 ENSG00000272832
GH03J133473 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.8 -74.7 -74686 5.5 PKNOX1 BATF ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CREM RXRA CBFB GC03P133475 GC03P133476 BFSP2 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TOPBP1 TFP1 GC03P133482
GH03J133479 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.8 -71.0 -71030 1.2 HDGF PKNOX1 MZF1 FEZF1 ZIC2 RFX5 POLR2A EED PRDM10 KLF8 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TOPBP1 TFP1 BFSP2 GC03P133482 GC03P133476 GC03P133475
GH03J133523 Enhancer 0.5 ENCODE 13.2 -27.2 -27214 0.2 GATA3 NFIB RXRA IKZF1 HMBOX1 ENSG00000250983 ENSG00000201827 BFSP2-AS1 BFSP2 ENSG00000272832 GC03P133492
GH03J133495 Enhancer 0.2 dbSUPER 12.2 -55.1 -55057 0.7 CDV3 ENSG00000250983 ENSG00000201827 BFSP2-AS1 TOPBP1 TFP1 GC03P133492 ENSG00000272832
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000201827 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000201827 Gene

Genomic Locations for ENSG00000201827 Gene
chr3:133,551,186-133,551,315
(GRCh38/hg38)
Size:
130 bases
Orientation:
Plus strand
chr3:133,270,030-133,270,159
(GRCh37/hg19)
Size:
130 bases
Orientation:
Plus strand

Genomic View for ENSG00000201827 Gene

Genes around ENSG00000201827 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000201827 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201827 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000201827 Gene

Proteins for ENSG00000201827 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000201827 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201827 Gene

Domains & Families for ENSG00000201827 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000201827 Gene

Function for ENSG00000201827 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201827 Gene

Localization for ENSG00000201827 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201827 Gene

Pathways & Interactions for ENSG00000201827 Gene

SuperPathways for ENSG00000201827 Gene

PathCards logo More details on SuperPathways for ENSG00000201827
No Data Available

Interacting Proteins for ENSG00000201827 Gene

Gene Ontology (GO) - Biological Process for ENSG00000201827 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000201827 Gene

Drugs & Compounds for ENSG00000201827 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000201827 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000201827 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201827 Gene

No ASD Table

Relevant External Links for ENSG00000201827 Gene

GeneLoc Exon Structure for
ENSG00000201827

Expression for ENSG00000201827 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000201827 Gene

mRNA expression in normal human tissues for ENSG00000201827 Gene
mRNA expression by GTEx for ENSG00000201827 Gene
genes like me logo Genes that share expression patterns with ENSG00000201827: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201827 Gene

Orthologs for ENSG00000201827 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000201827 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORA33 34 34
  • 92 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia SNORA33 34
  • 65 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORA33 34 34
  • 65 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORA33 34
  • 57 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm24894 34
  • 55 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA33 34
  • 48 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORA33 34
  • 49 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia SNORA33 34
  • 50 (a)
 OneToOne
Species where no ortholog for ENSG00000201827 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000201827 Gene

ENSEMBL:
Gene Tree for ENSG00000201827 (if available)
TreeFam:
Gene Tree for ENSG00000201827 (if available)

Paralogs for ENSG00000201827 Gene

No data available for Paralogs for ENSG00000201827 Gene

Variants for ENSG00000201827 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000201827 Gene

Disorders for ENSG00000201827 Gene

No disorders were found for ENSG00000201827 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201827 Gene

Publications for ENSG00000201827 Gene

No publications were found for ENSG00000201827 Gene.

Products for ENSG00000201827 Gene

Sources for ENSG00000201827 Gene

Content
Loading form....