ENSG00000201788 Gene (RNA Gene)

 

GC12M044880
GIFtS:
6
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Aliases for ENSG00000201788 Gene

Data sources for ENSG00000201788 Gene:

Subcategory (RNA class) for ENSG00000201788 Gene

misc_RNA

Aliases for ENSG00000201788 Gene

External Ids for ENSG00000201788 Gene

Previous GeneCards Identifiers for ENSG00000201788 Gene

  • GC12M043560
  • GC12M045274

Summaries for ENSG00000201788 Gene

GeneCards Summary for ENSG00000201788 Gene

ENSG00000201788 is an RNA Gene, and is affiliated with the misc_RNA class.

Rfam classification for ENSG00000201788 Gene

Additional gene information for ENSG00000201788 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000201788 Gene

Genomics for ENSG00000201788 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000201788 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J044874 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.5 5469 4.2 ZBTB10 CTCF ZEB1 ZIC2 ZNF610 SIN3A REST VEZF1 KLF7 ZNF341 NELL2 DBX2 ENSG00000201788 lnc-DBX2-5 lnc-DBX2-3
GH12J044890 Enhancer 0.7 Ensembl 0.4 -8.3 -8332 0.2 TAL1 FOSL1 NFE2 SMARCA4 STAT5A FOXM1 TCF12 MTA2 TEAD4 NR2F6 NELL2 ENSG00000201788 lnc-DBX2-3
GH12J044889 Enhancer 0.7 ENCODE 0.4 -9.0 -8995 1.1 TAL1 FOSL1 SMARCA4 STAT5A FOXM1 TCF12 MTA2 NFE2 TEAD4 NR2F6 NELL2 DBX2 ENSG00000201788 lnc-DBX2-3
GH12J044870 Enhancer 0.4 FANTOM5 dbSUPER 0.4 +10.1 10138 0.3 NELL2 ENSG00000201788 lnc-DBX2-5
GH12J044851 Enhancer 0.3 dbSUPER 0.3 +28.0 27963 3.1 FEZF1 HLF lnc-DBX2-5 DBX2 NELL2 ENSG00000201788 lnc-TMEM117-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000201788 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000201788 Gene

Latest Assembly
chr12:44,880,868-44,880,969
(GRCh38/hg38)
Size:
102 bases
Orientation:
Minus strand

Previous Assembly
chr12:45,274,651-45,274,752
(GRCh37/hg19 by Ensembl)
Size:
102 bases
Orientation:
Minus strand

Genomic View for ENSG00000201788 Gene

Genes around ENSG00000201788 on UCSC Golden Path with GeneCards custom track
ENSG00000201788 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000201788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201788 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000201788 Gene

Proteins for ENSG00000201788 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for ENSG00000201788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201788 Gene

Domains & Families for ENSG00000201788 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000201788 Gene

Function for ENSG00000201788 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201788 Gene

Localization for ENSG00000201788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201788 Gene

Pathways & Interactions for ENSG00000201788 Gene

PathCards logo

SuperPathways for ENSG00000201788 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000201788 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000201788 Gene

Drugs & Compounds for ENSG00000201788 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for ENSG00000201788 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000201788 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000647BA7_9606 Y_RNA 102 2

Ensembl: ENST00000364918 (view in UCSC) ,

Rfam: RF00019,

ENSG00000201788 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201788 Gene

No ASD Table

Relevant External Links for ENSG00000201788 Gene

GeneLoc Exon Structure for
ENSG00000201788

No data available for mRNA/cDNA for ENSG00000201788 Gene

Expression for ENSG00000201788 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000201788 Gene

mRNA expression in normal human tissues for ENSG00000201788 Gene
mRNA expression by GTEx for ENSG00000201788 Gene
genes like me logo Genes that share expression patterns with ENSG00000201788: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201788 Gene

Orthologs for ENSG00000201788 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000201788 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia Y_RNA 31
  • 97 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia Y_RNA 31
  • 85 (a)
 OneToMany
Species where no ortholog for ENSG00000201788 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000201788 Gene

ENSEMBL:
Gene Tree for ENSG00000201788 (if available)
TreeFam:
Gene Tree for ENSG00000201788 (if available)

Paralogs for ENSG00000201788 Gene

No data available for Paralogs for ENSG00000201788 Gene

Variants for ENSG00000201788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000201788 Gene

Disorders for ENSG00000201788 Gene

No disorders were found for ENSG00000201788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201788 Gene

Publications for ENSG00000201788 Gene

No publications were found for ENSG00000201788 Gene.

No data available for Mastermind for ENSG00000201788 Gene

Products for ENSG00000201788 Gene

Sources for ENSG00000201788 Gene