Aliases for ENSG00000201541 Gene

Subcategory (RNA class) for ENSG00000201541 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000201541 Gene

  • AC004125.1 5
  • SNODB1116 177
  • SNORA1L1 170
  • RF00408 168

External Ids for ENSG00000201541 Gene

Previous GeneCards Identifiers for ENSG00000201541 Gene

  • GC16M024253

Summaries for ENSG00000201541 Gene

GeneCards Summary for ENSG00000201541 Gene

ENSG00000201541 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000201541 Gene

  • Small nucleolar RNA SNORA1

Additional gene information for ENSG00000201541 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000201541 Gene

Genomics for ENSG00000201541 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000201541 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J024344 Enhancer 0.9 Ensembl ENCODE 0.4 -11.6 -11624 0.5 ZNF629 ZNF692 PRDM1 ZIC2 RFX1 BRCA1 CEBPB FOS CHD2 OSR2 CACNG3 ENSG00000201541 RF00017-2018 RBBP6
GH16J024346 Enhancer 0.7 Ensembl ENCODE 0.4 -14.8 -14788 3.3 TEAD4 PRDM1 POLR2A CUX1 STAT5A STAT1 RARA KAT2B NFIA TAF1 RF00017-2018 ENSG00000201541 CACNG3 RBBP6
GH16J024318 Enhancer 0.7 Ensembl ENCODE 0.4 +14.7 14746 0.4 BRCA1 CTCF TEAD4 HMBOX1 RFX5 SMC3 RAD21 ENSG00000201541 piR-38352-215 CACNG3 RBBP6
GH16J024309 Enhancer 0.7 ENCODE 0.4 +24.1 24052 0.2 KDM1A ZIC2 ZNF600 SCRT2 CEBPB FOS CHD2 JUN RCOR1 GTF2F1 piR-38352-215 ENSG00000201541 CACNG3 RBBP6
GH16J024343 Enhancer 0.5 ENCODE 0.4 -10.4 -10353 0.9 BDP1 CEBPB POLR3A TCF7L2 GTF3C2 ATF3 RBBP6 ENSG00000261669 PALB2 ENSG00000263326 RNU7-24P UBFD1 LCMT1-AS2 SCML2P2 ENSG00000201541 RF00017-2018
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000201541 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000201541 Gene

Genomic Locations for ENSG00000201541 Gene
chr16:24,333,415-24,333,547
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr16:24,344,736-24,344,868
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for ENSG00000201541 Gene

Genes around ENSG00000201541 on UCSC Golden Path with GeneCards custom track
ENSG00000201541 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000201541 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201541 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000201541 Gene

Proteins for ENSG00000201541 Gene

Post-translational modifications for ENSG00000201541 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201541 Gene

Domains & Families for ENSG00000201541 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000201541 Gene

Function for ENSG00000201541 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201541 Gene

Localization for ENSG00000201541 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201541 Gene

Pathways & Interactions for ENSG00000201541 Gene

PathCards logo

SuperPathways for ENSG00000201541 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000201541 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000201541 Gene

Drugs & Compounds for ENSG00000201541 Gene

No Compound Related Data Available

Transcripts for ENSG00000201541 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000201541 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000070168F_9606 snoRNA 133 4

Ensembl: ENST00000364671 (view in UCSC) ,

Rfam: RF00408,

snoDB: SNODB1116,

snOPY: Homo_sapiens300007,

ENSG00000201541 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201541 Gene

No ASD Table

Relevant External Links for ENSG00000201541 Gene

GeneLoc Exon Structure for
ENSG00000201541

No data available for mRNA/cDNA for ENSG00000201541 Gene

Expression for ENSG00000201541 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000201541 Gene

genes like me logo Genes that share expression patterns with ENSG00000201541: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201541 Gene

Orthologs for ENSG00000201541 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000201541 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA1 31
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA1 31
  • 84 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm22620 31
  • 80 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORA1 31
  • 73 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA1 31
  • 68 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA1 31
  • 66 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA1 31
  • 60 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA1 31
  • 59 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA1 31
  • 53 (a)
OneToMany
Species where no ortholog for ENSG00000201541 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ENSG00000201541 Gene

ENSEMBL:
Gene Tree for ENSG00000201541 (if available)
TreeFam:
Gene Tree for ENSG00000201541 (if available)

Paralogs for ENSG00000201541 Gene

No data available for Paralogs for ENSG00000201541 Gene

Variants for ENSG00000201541 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000201541 Gene

Disorders for ENSG00000201541 Gene

No disorders were found for ENSG00000201541 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201541 Gene

Publications for ENSG00000201541 Gene

No publications were found for ENSG00000201541 Gene.

No data available for Mastermind for ENSG00000201541 Gene

Products for ENSG00000201541 Gene

Sources for ENSG00000201541 Gene