ENSG00000201209 Gene (RNA Gene)

 

GC22M028232
GIFtS:
5
See more...

Aliases for ENSG00000201209 Gene

Data sources for ENSG00000201209 Gene:

Subcategory (RNA class) for ENSG00000201209 Gene

snoRNA

Aliases for ENSG00000201209 Gene

External Ids for ENSG00000201209 Gene

Previous GeneCards Identifiers for ENSG00000201209 Gene

  • GC22M026953
  • GC22M028628

Summaries for ENSG00000201209 Gene

GeneCards Summary for ENSG00000201209 Gene

ENSG00000201209 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000201209 Gene

  • Small nucleolar RNA SNORD42

Additional gene information for ENSG00000201209 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000201209 Gene

Genomics for ENSG00000201209 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000201209 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J028229 Enhancer 0.8 Ensembl ENCODE 250.7 +1.8 1780 3.5 HOMEZ SIN3A FOXA2 SAP130 TEAD3 ATF2 TFAP4 ZNF644 CTBP1 HLF ENSG00000201209 TTC28 ENSG00000272858 TTC28-AS1 piR-61101-448 PITPNB
GH22J028139 Enhancer 1 FANTOM5 Ensembl ENCODE 10.8 +91.1 91122 5.4 FEZF1 CEBPB ZNF513 PRDM6 MAFK JUND ATF2 BHLHE40 PRDM4 L3MBTL2 ENSG00000201209 TTC28-AS1 TTC28 piR-59297-442 HSALNG0134760 PITPNB
GH22J028316 Enhancer 0.8 ENCODE 10.2 -83.4 -83395 0.2 NFATC3 NBN ZEB2 TAL1 NCOR1 PRDM10 CBX1 IRF9 SMARCA4 HDAC2 ENSG00000201209 ENSG00000199797 piR-61101-449 TTC28 PITPNB
GH22J028051 Enhancer 0.7 Ensembl ENCODE 10.5 +180.6 180622 2.4 IKZF1 CTCF REST SMC3 RAD21 YY1 RFX1 ZNF143 TRIM22 POLR2A ENSG00000201209 TTC28 RF00017-3789 RN7SL757P lnc-PITPNB-7 piR-48209-479 PITPNB
GH22J028283 Enhancer 0.7 Ensembl ENCODE 10.8 -50.5 -50474 1.8 JUND PRDM6 ATF2 ZBTB21 JUN ZNF629 ATF3 ATF7 CEBPB ENSG00000201209 piR-50437-432 piR-59804-014 PITPNB TTC28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000201209 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000201209 Gene

Latest Assembly
chr22:28,232,756-28,232,823
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand

Previous Assembly
chr22:28,628,744-28,628,811
(GRCh37/hg19 by Ensembl)
Size:
68 bases
Orientation:
Minus strand

Genomic View for ENSG00000201209 Gene

Genes around ENSG00000201209 on UCSC Golden Path with GeneCards custom track
ENSG00000201209 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000201209 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000201209 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000201209 Gene

Proteins for ENSG00000201209 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for ENSG00000201209 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000201209 Gene

Domains & Families for ENSG00000201209 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000201209 Gene

Function for ENSG00000201209 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000201209 Gene

Localization for ENSG00000201209 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000201209 Gene

Pathways & Interactions for ENSG00000201209 Gene

PathCards logo

SuperPathways for ENSG00000201209 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000201209 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000201209 Gene

Drugs & Compounds for ENSG00000201209 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for ENSG00000201209 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000201209 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000693C26_9606 snoRNA 68 3

Ensembl: ENST00000364339 (view in UCSC) ,

Rfam: RF00150,

snoDB: SNODB1694,

URS000081D482_9606 snoRNA 66 2

snoDB: SNODB1391,

snOPY: Homo_sapiens300682,

URS0001BC2EB4_9606 snoRNA 66 1

Rfam: RF00150,

ENSG00000201209 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000201209 Gene

No ASD Table

Relevant External Links for ENSG00000201209 Gene

GeneLoc Exon Structure for
ENSG00000201209

No data available for mRNA/cDNA for ENSG00000201209 Gene

Expression for ENSG00000201209 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000201209 Gene

Orthologs for ENSG00000201209 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000201209 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD42 31
  • 96 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD42 31
  • 65 (a)
 OneToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD42 31
  • 64 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORD42 31
  • 59 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD42 31
  • 60 (a)
 OneToMany
Species where no ortholog for ENSG00000201209 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ENSG00000201209 Gene

ENSEMBL:
Gene Tree for ENSG00000201209 (if available)
TreeFam:
Gene Tree for ENSG00000201209 (if available)

Paralogs for ENSG00000201209 Gene

No data available for Paralogs for ENSG00000201209 Gene

Variants for ENSG00000201209 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000201209 Gene

Disorders for ENSG00000201209 Gene

No disorders were found for ENSG00000201209 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000201209 Gene

Publications for ENSG00000201209 Gene

No publications were found for ENSG00000201209 Gene.

No data available for Mastermind for ENSG00000201209 Gene

Products for ENSG00000201209 Gene

Sources for ENSG00000201209 Gene