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Aliases for ENSG00000200677 Gene

Subcategory (RNA class) for ENSG00000200677 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for ENSG00000200677 Gene

  • RF00093 5

External Ids for ENSG00000200677 Gene

Previous GeneCards Identifiers for ENSG00000200677 Gene

  • GC15M089099
  • GC15M091298

Summaries for ENSG00000200677 Gene

GeneCards Summary for ENSG00000200677 Gene

ENSG00000200677 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000200677 Gene - the ORGUL cluster for this gene includes several descriptions:

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

  • Small nucleolar RNA SNORD18: U18 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box motifs. It is encoded in introns of ribosomal protein L1 in Xenopus and human, and in introns of elongation factor 1 beta in yeast. Related snoRNAs in Arabidopsis and rice have been named R63 and Z106 respectively. Factors involved in the processing of the intronic snoRNA have recently been elucidated [2].

Additional gene information for ENSG00000200677 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000200677 Gene

Genomics for ENSG00000200677 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000200677 Gene

Promoters and enhancers for ENSG00000200677 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J090716 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.3 +38.0 37974 2.4 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B BLM PIR32733 CRTC3-AS1 LOC100631255 UNC45A ENSG00000259314 ENSG00000259212 ENSG00000200677 ENSG00000228998 GC15M090756
GH15J090835 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -84.0 -84012 6.8 HDGF SMAD1 FOXA2 ARNT ZNF766 CBX5 FOS REST ZNF592 MEF2D FURIN LOC105370969 UNC45A LOC100631255 FES ENSG00000259314 BLM VPS33B-DT MAN2A2 HDDC3
GH15J090647 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +106.0 105959 4.7 HDGF PKNOX1 SMAD1 ARNT YY1 POLR2B ZNF766 ZNF213 E2F8 ZNF207 ENSG00000278370 UNC45A ENSG00000259314 ENSG00000259212 LOC100631255 VPS33B BLM CRTC3 ENSG00000200677 ZNF774
GH15J090567 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +185.1 185137 4.4 HDGF PKNOX1 ATF1 ARNT IRF4 ZNF766 ATF7 REST ZNF592 SMARCA4 GC15M090544 IQGAP1 CRTC3 ENSG00000200677 FES CIB1 UNC45A
GH15J090813 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -61.2 -61193 6.4 CTCF PKNOX1 ESRRA SMAD1 NFIB KLF17 EBF1 ZIC2 RAD21 ZFHX2 BLM FES MAN2A2 ENSG00000200677 CRTC3 PIR44829 GC15M090794
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000200677 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000200677 Gene

Genomic Locations for ENSG00000200677 Gene
chr15:90,755,243-90,755,312
(GRCh38/hg38)
Size:
70 bases
Orientation:
Minus strand
chr15:91,298,473-91,298,542
(GRCh37/hg19)

Genomic View for ENSG00000200677 Gene

Genes around ENSG00000200677 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000200677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000200677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000200677 Gene

ORGUL Member Location for ENSG00000200677 gene

No data available for RefSeq DNA sequence for ENSG00000200677 Gene

Proteins for ENSG00000200677 Gene

Post-translational modifications for ENSG00000200677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000200677 Gene

Domains & Families for ENSG00000200677 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000200677 Gene

Function for ENSG00000200677 Gene

Phenotypes From GWAS Catalog for ENSG00000200677 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000200677 Gene

Localization for ENSG00000200677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000200677 Gene

Pathways & Interactions for ENSG00000200677 Gene

SuperPathways for ENSG00000200677 Gene

No Data Available

Interacting Proteins for ENSG00000200677 Gene

Gene Ontology (GO) - Biological Process for ENSG00000200677 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000200677 Gene

Drugs & Compounds for ENSG00000200677 Gene

No Compound Related Data Available

Transcripts for ENSG00000200677 Gene

mRNA/cDNA for ENSG00000200677 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000200677 Gene

No ASD Table

Relevant External Links for ENSG00000200677 Gene

GeneLoc Exon Structure for
ENSG00000200677

Expression for ENSG00000200677 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000200677 Gene

Orthologs for ENSG00000200677 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000200677 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD18 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD18 34
  • 74 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD18 34
  • 70 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD18 34
  • 64 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 34 34 34 34
  • 66 (a)
ManyToMany
Species where no ortholog for ENSG00000200677 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000200677 Gene

ENSEMBL:
Gene Tree for ENSG00000200677 (if available)
TreeFam:
Gene Tree for ENSG00000200677 (if available)

Paralogs for ENSG00000200677 Gene

No data available for Paralogs for ENSG00000200677 Gene

Variants for ENSG00000200677 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000200677 Gene

Disorders for ENSG00000200677 Gene

No disorders were found for ENSG00000200677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000200677 Gene

Publications for ENSG00000200677 Gene

  1. Release of U18 snoRNA from its host intron requires interaction of Nop1p with the Rnt1p endonuclease. (PMID: 11726521) Giorgi C … Bozzoni I (The EMBO journal 2001) 1
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S … Bozzoni I (Nucleic acids research 1993) 1

Products for ENSG00000200677 Gene

Sources for ENSG00000200677 Gene

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