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Aliases for ENSG00000200288 Gene

Subcategory (RNA class) for ENSG00000200288 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000200288 Gene

  • RF00425 5

External Ids for ENSG00000200288 Gene

ORGUL Members for ENSG00000200288 Gene

Previous GeneCards Identifiers for ENSG00000200288 Gene

  • GC03M178825
  • GC03M177342

Summaries for ENSG00000200288 Gene

GeneCards Summary for ENSG00000200288 Gene

ENSG00000200288 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000200288 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000200288 Gene

Genomics for ENSG00000200288 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000200288 Gene

Promoters and enhancers for ENSG00000200288 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J177624 Enhancer 0.7 ENCODE 650.7 -0.2 -219 0.2 SOX5 SOX13 GATAD2A CTCF FOXA2 RFX1 NFYC MNT PPARG RAD21 ENSG00000200288 GC03M177625 ENSG00000236385 LINC00578
GH03J177622 Enhancer 0.5 dbSUPER 650.7 +1.0 1012 1.3 CTCF PKNOX1 JUND GATA3 ZFX GC03M177625 ENSG00000200288 ENSG00000236385 RN7SKP52 LINC00578
GH03J177596 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +27.2 27196 3.7 PKNOX1 THRB RAD21 YY1 FOS RXRA ZBTB11 ELF1 REST ZNF592 ENSG00000200288 GC03M177625 RN7SKP52 LINC00578
GH03J177441 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +177.0 177033 12.3 PKNOX1 FOXA2 SIN3A IRF4 BRCA1 YY1 FOS RUNX3 DEK RXRA LINC00578 ENSG00000200288 RN7SKP52
GH03J177574 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.2 +49.9 49908 0.2 CLOCK FOXA2 ZSCAN4 KLF17 RAD21 YY1 EGR1 RCOR1 EGR2 RXRA ENSG00000200288 GC03M177625 RN7SKP52 LINC00578
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000200288 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000200288 Gene

Genomic Locations for ENSG00000200288 Gene
chr3:177,624,282-177,624,409
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand
chr3:177,342,070-177,342,197
(GRCh37/hg19)
Size:
128 bases
Orientation:
Minus strand

Genomic View for ENSG00000200288 Gene

Genes around ENSG00000200288 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000200288 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000200288 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000200288 Gene

Proteins for ENSG00000200288 Gene

Post-translational modifications for ENSG00000200288 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000200288 Gene

Domains & Families for ENSG00000200288 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000200288 Gene

Function for ENSG00000200288 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000200288 Gene

Localization for ENSG00000200288 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000200288 Gene

Pathways & Interactions for ENSG00000200288 Gene

SuperPathways for ENSG00000200288 Gene

No Data Available

Interacting Proteins for ENSG00000200288 Gene

Gene Ontology (GO) - Biological Process for ENSG00000200288 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000200288 Gene

Drugs & Compounds for ENSG00000200288 Gene

No Compound Related Data Available

Transcripts for ENSG00000200288 Gene

mRNA/cDNA for ENSG00000200288 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000200288 Gene

No ASD Table

Relevant External Links for ENSG00000200288 Gene

GeneLoc Exon Structure for
ENSG00000200288

Expression for ENSG00000200288 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000200288 Gene

genes like me logo Genes that share expression patterns with ENSG00000200288: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000200288 Gene

Orthologs for ENSG00000200288 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000200288 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA18 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA18 34 34 34 34 34 34 34 34
  • 78 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA18 34 34 34 34 34 34 34 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA18 34
  • 72 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm26186 34
  • 67 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA18 34
  • 65 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA18 34
  • 72 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA18 34
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA18 34
  • 63 (a)
OneToMany
Species where no ortholog for ENSG00000200288 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000200288 Gene

ENSEMBL:
Gene Tree for ENSG00000200288 (if available)
TreeFam:
Gene Tree for ENSG00000200288 (if available)

Paralogs for ENSG00000200288 Gene

No data available for Paralogs for ENSG00000200288 Gene

Variants for ENSG00000200288 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000200288 Gene

Disorders for ENSG00000200288 Gene

No disorders were found for ENSG00000200288 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000200288 Gene

Publications for ENSG00000200288 Gene

No publications were found for ENSG00000200288 Gene.

Products for ENSG00000200288 Gene

Sources for ENSG00000200288 Gene

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