Aliases for ENSG00000200112 Gene

Subcategory (RNA class) for ENSG00000200112 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000200112 Gene

  • AC012157.1 5
  • SNORD56L4 170
  • SNODB693 177
  • RF00275 168

External Ids for ENSG00000200112 Gene

Previous GeneCards Identifiers for ENSG00000200112 Gene

  • GC12M114753
  • GC12M116290

Summaries for ENSG00000200112 Gene

GeneCards Summary for ENSG00000200112 Gene

ENSG00000200112 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000200112 Gene

  • Small nucleolar RNA SNORD56

Additional gene information for ENSG00000200112 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000200112 Gene

Genomics for ENSG00000200112 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000200112 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J115794 Enhancer 0.6 ENCODE 10.9 +57.9 57857 0.2 POLR2A IRF2 CTCF REST FOXA2 TBX3 FEZF1 KDM1A NR2F6 RAD21 ENSG00000200112 piR-35674-116 lnc-MED13L-3 ENSG00000257781 MED13L
GH12J115882 Enhancer 0.2 Ensembl 11.1 -29.6 -29583 0.2 ENSG00000200112 ENSG00000286991 LINC02463 MED13L
GH12J115890 Enhancer 0.2 Ensembl 11.1 -39.1 -39083 2 ENSG00000200112 piR-38351-116 RF00017-1290 MED13L
GH12J115869 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -19.2 -19244 5.2 CEBPG CTCF PRDM10 KDM1A TARDBP FOXA1 ATF7 CEBPB FOXK2 SMARCA5 ENSG00000286991 LINC02463 ENSG00000200112 MED13L
GH12J115840 Enhancer 0.7 Ensembl 0.4 +12.4 12417 0.2 GATAD2A ATF7 FOXA1 SP1 NR3C1 FOXA2 ATF2 ZSCAN9 FOSL2 SAP130 ENSG00000200112 piR-35674-116 LINC02463 MED13L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000200112 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000200112 Gene

Genomic Locations for ENSG00000200112 Gene
chr12:115,852,648-115,852,718
(GRCh38/hg38)
Size:
71 bases
Orientation:
Minus strand
chr12:116,290,453-116,290,523
(GRCh37/hg19)
Size:
71 bases
Orientation:
Minus strand

Genomic View for ENSG00000200112 Gene

Genes around ENSG00000200112 on UCSC Golden Path with GeneCards custom track
ENSG00000200112 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000200112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000200112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000200112 Gene

Proteins for ENSG00000200112 Gene

Post-translational modifications for ENSG00000200112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000200112 Gene

Domains & Families for ENSG00000200112 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000200112 Gene

Function for ENSG00000200112 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000200112 Gene

Localization for ENSG00000200112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000200112 Gene

Pathways & Interactions for ENSG00000200112 Gene

PathCards logo

SuperPathways for ENSG00000200112 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000200112 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000200112 Gene

Drugs & Compounds for ENSG00000200112 Gene

No Compound Related Data Available

Transcripts for ENSG00000200112 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000200112 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000069691F_9606 snoRNA 71 4

Ensembl: ENST00000363242 (view in UCSC) ,

Rfam: RF00275,

snoDB: SNODB693,

snOPY: Homo_sapiens300362,

ENSG00000200112 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000200112 Gene

No ASD Table

Relevant External Links for ENSG00000200112 Gene

GeneLoc Exon Structure for
ENSG00000200112

No data available for mRNA/cDNA for ENSG00000200112 Gene

Expression for ENSG00000200112 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000200112 Gene

Orthologs for ENSG00000200112 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000200112 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD56 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23650 31
  • 83 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORD56 31
  • 72 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD56 31
  • 66 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORD56 31
  • 62 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORD56 31
  • 61 (a)
OneToMany
Species where no ortholog for ENSG00000200112 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000200112 Gene

ENSEMBL:
Gene Tree for ENSG00000200112 (if available)
TreeFam:
Gene Tree for ENSG00000200112 (if available)

Paralogs for ENSG00000200112 Gene

No data available for Paralogs for ENSG00000200112 Gene

Variants for ENSG00000200112 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000200112 Gene

Disorders for ENSG00000200112 Gene

No disorders were found for ENSG00000200112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000200112 Gene

Publications for ENSG00000200112 Gene

No publications were found for ENSG00000200112 Gene.

No data available for Mastermind for ENSG00000200112 Gene

Products for ENSG00000200112 Gene

Sources for ENSG00000200112 Gene