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ENSG00000200090 Gene(RNA Gene)

 

GCID:
GC11M054926
GIFtS:
8
Genes Participants
UDN Logo

Aliases for ENSG00000200090 Gene

Subcategory (RNA class) for ENSG00000200090 Gene

Y RNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000200090 Gene

  • RF00019 5

External Ids for ENSG00000200090 Gene

ORGUL Members for ENSG00000200090 Gene

Previous GeneCards Identifiers for ENSG00000200090 Gene

  • GC11M047706
  • GC11M047815
  • GC11M048083
  • GC11M048806
  • GC11M049911
  • GC11M047923
  • GC11M047962
  • GC11M050809
  • GC11M051604
  • GC11M052266
  • GC11M052926
  • GC11M053594
  • GC11M054260

Summaries for ENSG00000200090 Gene

GeneCards Summary for ENSG00000200090 Gene

ENSG00000200090 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for ENSG00000200090 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000200090 Gene

Genomics for ENSG00000200090 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000200090 Gene

Promoters and enhancers for ENSG00000200090 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J047373 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 65.6 +350.4 350350 6.2 HDGF PKNOX1 SMAD1 ARID4B SIN3A YBX1 POLR2B ZNF766 CBX5 ZNF207 SPI1 GC11M055140 FNBP4 NUP160 ENSG00000200090 ENSG00000270060 DDB2 C1QTNF4 SLC39A13 RPS10P19
GH11J047577 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 77.1 +148.1 148126 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 KBTBD4 ENSG00000231880 NDUFS3 NUP160 FNBP4 ENSG00000200090 ENSG00000270060 DDB2 ZNF408 CELF1
GH11J047506 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 96.2 +213.4 213411 14.4 HDGF PKNOX1 ZFP64 ZNF213 FOS JUNB ZC3H11A REST SREBF1 SMARCA4 ENSG00000270072 NUP160 FNBP4 ENSG00000200090 ENSG00000270060 C1QTNF4 CELF1 DDB2 ZNF408 AMBRA1
GH11J047267 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 42.9 +456.6 456648 5.4 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 YY1 MADD LOC101928943 FNBP4 NUP160 ENSG00000270060 ENSG00000200090 DDB2 ZNF408 ACP2 RPS10P19
GH11J047175 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 40.6 +549.3 549252 4.7 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ARFGAP2 MIR6745 NUP160 FNBP4 ENSG00000270060 ENSG00000200090 DDB2 RPS10P19 ZNF408 LRP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000200090 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000200090 Gene

Genomic Locations for ENSG00000200090 Gene
chr11:47,726,894-47,726,992
(GRCh38/hg38)
Size:
99 bases
Orientation:
Minus strand
chr11:47,748,446-47,748,544
(GRCh37/hg19)
Size:
99 bases
Orientation:
Minus strand

Genomic View for ENSG00000200090 Gene

Genes around ENSG00000200090 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000200090 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000200090 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000200090 Gene

Proteins for ENSG00000200090 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000200090 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000200090 Gene

Domains & Families for ENSG00000200090 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000200090 Gene

Function for ENSG00000200090 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000200090 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000200090 Gene

Localization for ENSG00000200090 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000200090 Gene

Pathways & Interactions for ENSG00000200090 Gene

SuperPathways for ENSG00000200090 Gene

PathCards logo More details on SuperPathways for ENSG00000200090
No Data Available

Interacting Proteins for ENSG00000200090 Gene

Gene Ontology (GO) - Biological Process for ENSG00000200090 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000200090 Gene

Drugs & Compounds for ENSG00000200090 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000200090 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000200090 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000200090 Gene

No ASD Table

Relevant External Links for ENSG00000200090 Gene

GeneLoc Exon Structure for
ENSG00000200090

Expression for ENSG00000200090 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000200090 Gene

mRNA expression in normal human tissues for ENSG00000200090 Gene
mRNA expression by GTEx for ENSG00000200090 Gene
genes like me logo Genes that share expression patterns with ENSG00000200090: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000200090 Gene

Orthologs for ENSG00000200090 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000200090 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia Y_RNA 34
  • 99 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia Y_RNA 34
  • 79 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia Y_RNA 34
  • 78 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia Y_RNA 34
  • 73 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves Y_RNA 34
  • 77 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia Y_RNA 34
  • 82 (a)
 OneToMany
Species where no ortholog for ENSG00000200090 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000200090 Gene

ENSEMBL:
Gene Tree for ENSG00000200090 (if available)
TreeFam:
Gene Tree for ENSG00000200090 (if available)

Paralogs for ENSG00000200090 Gene

No data available for Paralogs for ENSG00000200090 Gene

Variants for ENSG00000200090 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000200090 Gene

Disorders for ENSG00000200090 Gene

No disorders were found for ENSG00000200090 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000200090 Gene

Publications for ENSG00000200090 Gene

No publications were found for ENSG00000200090 Gene.

Products for ENSG00000200090 Gene

Sources for ENSG00000200090 Gene

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