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Aliases for ENSG00000199899 Gene

Subcategory (RNA class) for ENSG00000199899 Gene

Y RNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000199899 Gene

  • RF00019 5

External Ids for ENSG00000199899 Gene

ORGUL Members for ENSG00000199899 Gene

Previous GeneCards Identifiers for ENSG00000199899 Gene

  • GC12M112058
  • GC12M112061
  • GC12M113594

Summaries for ENSG00000199899 Gene

GeneCards Summary for ENSG00000199899 Gene

ENSG00000199899 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for ENSG00000199899 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

Additional gene information for ENSG00000199899 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000199899 Gene

Genomics for ENSG00000199899 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000199899 Gene

Promoters and enhancers for ENSG00000199899 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J113152 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.7 +3.7 3670 0.7 SIN3A GLIS2 ARID2 E2F8 ZNF143 SP3 REST SNIP1 GMEB1 SMARCA4 RBM19 ENSG00000201208 DDX54 RITA1 GC12M113158 ENSG00000199899 CFAP73
GH12J113153 Enhancer 0.8 ENCODE dbSUPER 0.7 +4.2 4150 0.1 SCRT1 GLIS2 SP3 ZBTB48 VEZF1 SCRT2 ZNF548 ZNF24 RBM19 ENSG00000201208 DDX54 RITA1 ENSG00000199899 GC12M113158 CFAP73
GH12J113154 Enhancer 0.7 Ensembl ENCODE 0.7 +2.2 2243 1 ZNF335 USF1 POLR2A ZBTB6 SIN3A CTBP2 EZH2 ENSG00000201208 DDX54 RITA1 ENSG00000199899 GC12M113158 CFAP73
GH12J113149 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +7.1 7096 1.1 MXI1 KLF1 MAZ RFX1 KLF17 SIN3A BMI1 ZIC2 TEAD3 ZFHX2 CFAP73 RASAL1 ENSG00000201208 DDX54 RITA1 ENSG00000199899 GC12M113158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000199899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000199899 Gene

Genomic Locations for ENSG00000199899 Gene
chr12:113,156,763-113,156,861
(GRCh38/hg38)
Size:
99 bases
Orientation:
Minus strand
chr12:113,594,570-113,594,666
(GRCh37/hg19)
Size:
97 bases
Orientation:
Minus strand

Genomic View for ENSG00000199899 Gene

Genes around ENSG00000199899 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000199899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000199899 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000199899 Gene

Proteins for ENSG00000199899 Gene

Post-translational modifications for ENSG00000199899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000199899 Gene

Domains & Families for ENSG00000199899 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000199899 Gene

Function for ENSG00000199899 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000199899 Gene

Localization for ENSG00000199899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000199899 Gene

Pathways & Interactions for ENSG00000199899 Gene

SuperPathways for ENSG00000199899 Gene

No Data Available

Interacting Proteins for ENSG00000199899 Gene

Gene Ontology (GO) - Biological Process for ENSG00000199899 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000199899 Gene

Drugs & Compounds for ENSG00000199899 Gene

No Compound Related Data Available

Transcripts for ENSG00000199899 Gene

mRNA/cDNA for ENSG00000199899 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000199899 Gene

No ASD Table

Relevant External Links for ENSG00000199899 Gene

GeneLoc Exon Structure for
ENSG00000199899

Expression for ENSG00000199899 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000199899 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000199899 Gene

This gene is overexpressed in Fallopian Tube (x9.9), Brain - Caudate (basal ganglia) (x6.5), Brain - Hypothalamus (x6.4), Brain - Hippocampus (x4.5), Cervix - Endocervix (x4.5), and Brain - Amygdala (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000199899: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000199899 Gene

Orthologs for ENSG00000199899 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000199899 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 34
  • 98 (a)
OneToOne
Species where no ortholog for ENSG00000199899 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000199899 Gene

ENSEMBL:
Gene Tree for ENSG00000199899 (if available)
TreeFam:
Gene Tree for ENSG00000199899 (if available)

Paralogs for ENSG00000199899 Gene

No data available for Paralogs for ENSG00000199899 Gene

Variants for ENSG00000199899 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000199899 Gene

Disorders for ENSG00000199899 Gene

No disorders were found for ENSG00000199899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000199899 Gene

Publications for ENSG00000199899 Gene

No publications were found for ENSG00000199899 Gene.

Products for ENSG00000199899 Gene

Sources for ENSG00000199899 Gene

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