Aliases for ENSG00000187229 Gene

Data sources for ENSG00000187229 Gene:

Subcategory (RNA class) for ENSG00000187229 Gene

lncRNA

Aliases for ENSG00000187229 Gene

External Ids for ENSG00000187229 Gene

Previous GeneCards Identifiers for ENSG00000187229 Gene

  • GC08P018588
  • GC08P018622

Summaries for ENSG00000187229 Gene

GeneCards Summary for ENSG00000187229 Gene

ENSG00000187229 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000187229 include Glioma Susceptibility 1.

Additional gene information for ENSG00000187229 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000187229 Gene

Genomics for ENSG00000187229 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000187229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J018717 Promoter/Enhancer 1.1 Ensembl ENCODE 250.7 -0.8 -763 4.8 FEZF1 ZIC2 ZNF639 EP300 ZNF843 TEAD3 PRDM6 JUND ZBTB1 ZNF2 ENSG00000187229 piR-43105-622 NAT2 PSD3
GH08J018683 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 5.7 -36.5 -36534 2.4 GATA2 RAD21 PSD3 ENSG00000187229 piR-43105-622 HSALNG0063723 NAT2
GH08J018747 Enhancer 1 ENCODE dbSUPER 0.3 +27.2 27245 1.3 FEZF1 CEBPB MAFF RFX5 STAT3 TBP ZNF316 FOSL1 PRDM6 JUND piR-33422-419 ENSG00000187229 PSD3 NAT2
GH08J018739 Enhancer 0.8 ENCODE 0.4 +19.4 19445 0.4 ZSCAN16 FEZF1 ZIC2 ZNF341 ZNF843 PRDM6 ZNF2 ZNF24 REST ZNF189 piR-33422-419 ENSG00000187229 NAT2 PSD3
GH08J018740 Enhancer 0.7 ENCODE dbSUPER 0.3 +20.3 20334 1 ELF1 GABPA ZBTB40 SP7 GABPB1 TRIM28 ZNF366 ETV6 NR2C2 NR2F1 piR-33422-419 ENSG00000187229 NAT2 PSD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000187229 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000187229 Gene

Latest Assembly
chr8:18,720,751-18,734,689
(GRCh38/hg38)
Size:
13,939 bases
Orientation:
Plus strand

Previous Assembly
chr8:18,578,415-18,591,915
(GRCh37/hg19 by Ensembl)
Size:
13,501 bases
Orientation:
Plus strand

Genomic View for ENSG00000187229 Gene

Genes around ENSG00000187229 on UCSC Golden Path with GeneCards custom track
ENSG00000187229 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000187229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000187229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000187229 Gene

Proteins for ENSG00000187229 Gene

Post-translational modifications for ENSG00000187229 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000187229 Gene

Domains & Families for ENSG00000187229 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000187229 Gene

Function for ENSG00000187229 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000187229 Gene

Localization for ENSG00000187229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000187229 Gene

Pathways & Interactions for ENSG00000187229 Gene

PathCards logo

SuperPathways for ENSG00000187229 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000187229 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000187229 Gene

Drugs & Compounds for ENSG00000187229 Gene

No Compound Related Data Available

Transcripts for ENSG00000187229 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000187229 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005FC263_9606 lncRNA 2054 3

Ensembl: ENST00000524252 (view in UCSC) ,

LNCipedia: lnc-NAT2-1:1,

NONCODE: NONHSAT125344.2,

URS00009BD7F3_9606 lncRNA 2054 2

LncBook: HSALNT0133680,

NONCODE: NONHSAT215482.1,

URS0001BD9552_9606 lncRNA 2492 1

LncBook: HSALNT0133679,

URS0000D59097_9606 lncRNA 2064 1

LNCipedia: lnc-NAT2-1:2,

URS0001BE00D3_9606 lncRNA 2054 1

LncBook: HSALNT0133680,

ENSG00000187229 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000187229 Gene

No ASD Table

Relevant External Links for ENSG00000187229 Gene

GeneLoc Exon Structure for
ENSG00000187229

No data available for mRNA/cDNA for ENSG00000187229 Gene

Expression for ENSG00000187229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000187229 Gene

genes like me logo Genes that share expression patterns with ENSG00000187229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000187229 Gene

Orthologs for ENSG00000187229 Gene

Evolution for ENSG00000187229 Gene

ENSEMBL:
Gene Tree for ENSG00000187229 (if available)
TreeFam:
Gene Tree for ENSG00000187229 (if available)

No data available for Orthologs for ENSG00000187229 Gene

Paralogs for ENSG00000187229 Gene

No data available for Paralogs for ENSG00000187229 Gene

Variants for ENSG00000187229 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000187229 Gene

Disorders for ENSG00000187229 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000187229 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000187229

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with ENSG00000187229: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000187229 Gene

Publications for ENSG00000187229 Gene

  1. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 74

No data available for Mastermind for ENSG00000187229 Gene

Products for ENSG00000187229 Gene

Sources for ENSG00000187229 Gene