Aliases for ENSG00000187229 Gene

Subcategory (RNA class) for ENSG00000187229 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000187229 Gene

  • Novel Transcript, Antisense To PSD3 5
  • NONHSAG049661.2 91
  • HSALNG0063724 164
  • AC100800.1 5
  • Lnc-NAT2-1 165

External Ids for ENSG00000187229 Gene

Previous GeneCards Identifiers for ENSG00000187229 Gene

  • GC08P018588
  • GC08P018622

Summaries for ENSG00000187229 Gene

GeneCards Summary for ENSG00000187229 Gene

ENSG00000187229 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000187229 include Astrocytoma.

Additional gene information for ENSG00000187229 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000187229 Gene

Genomics for ENSG00000187229 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000187229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J018718 Enhancer 0.9 Ensembl ENCODE 600.7 -0.6 -597 5.8 ZNF629 ZIC2 ZSCAN4 POLR2A PATZ1 ZNF600 ZBTB20 ZNF639 ZNF524 ZXDB ENSG00000187229 piR-43105-622 NAT2 PSD3
GH08J018683 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 5.7 -36.7 -36681 2.4 RAD21 GATA2 CTCF PSD3 ENSG00000187229 piR-43105-622 NAT2
GH08J018747 Enhancer 1 ENCODE dbSUPER 0.3 +27.1 27098 1.3 PRDM10 ZNF629 ZNF692 JUND PRDM1 ZNF792 ZBTB44 ZXDB CEBPB ZNF316 piR-33422-419 ENSG00000187229 PSD3 NAT2
GH08J018739 Enhancer 0.7 ENCODE 0.4 +19.3 19298 0.4 ZNF629 ZNF692 PRDM1 ZIC2 ZSCAN4 PATZ1 ZNF600 ZNF341 ZXDB ESR1 piR-33422-419 ENSG00000187229 PSD3 NAT2
GH08J018740 Enhancer 0.7 ENCODE dbSUPER 0.4 +20.2 20187 1 PRDM1 ETV6 NR2C2 GABPA NR2F1 ELF1 ZNF366 TRIM28 ZBTB40 GABPB1 piR-33422-419 ENSG00000187229 PSD3 NAT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000187229 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000187229 Gene

Genomic Locations for ENSG00000187229 Gene
chr8:18,720,898-18,734,406
(GRCh38/hg38)
Size:
13,509 bases
Orientation:
Plus strand
chr8:18,578,415-18,591,915
(GRCh37/hg19)
Size:
13,501 bases
Orientation:
Plus strand

Genomic View for ENSG00000187229 Gene

Genes around ENSG00000187229 on UCSC Golden Path with GeneCards custom track
ENSG00000187229 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000187229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000187229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000187229 Gene

Proteins for ENSG00000187229 Gene

Post-translational modifications for ENSG00000187229 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000187229 Gene

Domains & Families for ENSG00000187229 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000187229 Gene

Function for ENSG00000187229 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000187229 Gene

Localization for ENSG00000187229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000187229 Gene

Pathways & Interactions for ENSG00000187229 Gene

PathCards logo

SuperPathways for ENSG00000187229 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000187229 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000187229 Gene

Drugs & Compounds for ENSG00000187229 Gene

No Compound Related Data Available

Transcripts for ENSG00000187229 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000187229 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005FC263_9606 lncRNA 2054 3

Ensembl: ENST00000524252 (view in UCSC) ,

LNCipedia: lnc-NAT2-1:1,

NONCODE: NONHSAT125344.2,

URS00009BD7F3_9606 lncRNA 2054 2

LncBook: HSALNT0133680,

NONCODE: NONHSAT215482.1,

URS0000D59097_9606 lncRNA 2061 1

LNCipedia: lnc-NAT2-1:2,

ENSG00000187229 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000187229 Gene

No ASD Table

Relevant External Links for ENSG00000187229 Gene

GeneLoc Exon Structure for
ENSG00000187229

No data available for mRNA/cDNA for ENSG00000187229 Gene

Expression for ENSG00000187229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000187229 Gene

genes like me logo Genes that share expression patterns with ENSG00000187229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000187229 Gene

Orthologs for ENSG00000187229 Gene

Evolution for ENSG00000187229 Gene

ENSEMBL:
Gene Tree for ENSG00000187229 (if available)
TreeFam:
Gene Tree for ENSG00000187229 (if available)

No data available for Orthologs for ENSG00000187229 Gene

Paralogs for ENSG00000187229 Gene

No data available for Paralogs for ENSG00000187229 Gene

Variants for ENSG00000187229 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000187229 Gene

Disorders for ENSG00000187229 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000187229 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000187229

genes like me logo Genes that share disorders with ENSG00000187229: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000187229 Gene

Publications for ENSG00000187229 Gene

No publications were found for ENSG00000187229 Gene.

No data available for Mastermind for ENSG00000187229 Gene

Products for ENSG00000187229 Gene

Sources for ENSG00000187229 Gene