Aliases for EML2-AS1 Gene

Subcategory (RNA class) for EML2-AS1 Gene

lncRNA

Aliases for EML2-AS1 Gene

  • EML2 Antisense RNA 1 2 3 5
  • EML2-AS1 2 5
  • Chromosome 19 Open Reading Frame 83 2
  • C19orf83 3

External Ids for EML2-AS1 Gene

Previous HGNC Symbols for EML2-AS1 Gene

  • C19orf83

Summaries for EML2-AS1 Gene

GeneCards Summary for EML2-AS1 Gene

EML2-AS1 (EML2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with EML2-AS1 include Aortitis.

Additional gene information for EML2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EML2-AS1 Gene

Genomics for EML2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for EML2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J045637 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 643.8 -0.4 -447 6.3 SP1 GATAD2A CTCF HNRNPL TEAD4 PRDM10 ZNF629 IKZF1 KDM1A ZNF692 EML2-AS1 EML2 MIR330 ENSG00000268810 IRF2BP1 ENSG00000267114 CCDC61 SYMPK CLASRP FBXO46
GH19J045645 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 5.2 +4.4 4448 1.7 SP1 PRDM10 ZNF629 RFX1 LEF1 IKZF1 RFX5 KDM1A ZNF692 RCOR2 EML2 piR-32677-240 piR-36393-264 lnc-OPA3-1 piR-43583-272 SYMPK ERCC2 CCDC61 ENSG00000268810 GIPR
GH19J045511 Enhancer 0.3 dbSUPER 5 -129.4 -129444 0.6 ZBTB33 MLLT1 EML2-AS1 PPM1N HSALNG0126570 VASP LOC107985315 GPR4 OPA3
GH19J045235 Enhancer 0.3 Ensembl 5 -406.0 -405963 0.7 EZH2 LOC100420902 EML2-AS1 EXOC3L2 lnc-TRAPPC6A-3 TRAPPC6A MARK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EML2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for EML2-AS1 Gene

Genomic Locations for EML2-AS1 Gene
chr19:45,641,494-45,642,840
(GRCh38/hg38)
Size:
1,347 bases
Orientation:
Plus strand
chr19:46,144,752-46,146,098
(GRCh37/hg19)
Size:
1,347 bases
Orientation:
Plus strand

Genomic View for EML2-AS1 Gene

Genes around EML2-AS1 on UCSC Golden Path with GeneCards custom track
EML2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
EML2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EML2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EML2-AS1 Gene

Proteins for EML2-AS1 Gene

Post-translational modifications for EML2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EML2-AS1 Gene

Domains & Families for EML2-AS1 Gene

Gene Families for EML2-AS1 Gene

genes like me logo Genes that share domains with EML2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EML2-AS1 Gene

Function for EML2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EML2-AS1 Gene

Localization for EML2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EML2-AS1 Gene

Pathways & Interactions for EML2-AS1 Gene

PathCards logo

SuperPathways for EML2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EML2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for EML2-AS1 Gene

Drugs & Compounds for EML2-AS1 Gene

No Compound Related Data Available

Transcripts for EML2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for EML2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008121FA_9606 lncRNA 1077 2

HGNC: 48331,

RefSeq: NR_130728,

URS00007E2826_9606 lncRNA 886 1

Ensembl: ENST00000623430 (view in UCSC) ,

URS0000812207_9606 lncRNA 883 1

RefSeq: NR_130729,

URS00007CD06D_9606 lncRNA 838 1

Ensembl: ENST00000591087 (view in UCSC) ,

EML2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for EML2-AS1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for EML2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for EML2-AS1 Gene

No ASD Table

Relevant External Links for EML2-AS1 Gene

GeneLoc Exon Structure for
EML2-AS1

Expression for EML2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for EML2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EML2-AS1 Gene

Orthologs for EML2-AS1 Gene

Evolution for EML2-AS1 Gene

ENSEMBL:
Gene Tree for EML2-AS1 (if available)
TreeFam:
Gene Tree for EML2-AS1 (if available)

No data available for Orthologs for EML2-AS1 Gene

Paralogs for EML2-AS1 Gene

No data available for Paralogs for EML2-AS1 Gene

Variants for EML2-AS1 Gene

Additional dbSNP identifiers (rs#s) for EML2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for EML2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833848 CNV loss 17160897

Variation tolerance for EML2-AS1 Gene

Gene Damage Index Score: 2.99; 49.72% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for EML2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EML2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for EML2-AS1 Gene

Disorders for EML2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for EML2-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
aortitis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for EML2-AS1

genes like me logo Genes that share disorders with EML2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EML2-AS1 Gene

Publications for EML2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for EML2-AS1 Gene

Products for EML2-AS1 Gene

Sources for EML2-AS1 Gene