Aliases for EML2-AS1 Gene

Subcategory (RNA class) for EML2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for EML2-AS1 Gene

  • EML2 Antisense RNA 1 2 3 5
  • Chromosome 19 Open Reading Frame 83 2
  • C19orf83 3
  • EML2-AS1 2

External Ids for EML2-AS1 Gene

Previous HGNC Symbols for EML2-AS1 Gene

  • C19orf83

Summaries for EML2-AS1 Gene

GeneCards Summary for EML2-AS1 Gene

EML2-AS1 (EML2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EML2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EML2-AS1 Gene

Genomics for EML2-AS1 Gene

GeneHancer (GH) Regulatory Elements for EML2-AS1 Gene

Promoters and enhancers for EML2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J045637 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 793.7 -0.4 -447 6.3 SIN3A ZNF24 SP1 ZBTB40 CTCF ZBTB6 RBPJ SMARCE1 POLR2A USF2 EML2-AS1 EML2 MIR330 ENSG00000267114 CCDC61 ENSG00000268810 CLASRP FBXO46 PPP5D1 ENSG00000269148
GH19J045645 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 5.1 +4.4 4448 1.7 SIN3A ZNF24 SP1 ZBTB40 SMARCE1 FOS HCFC1 CC2D1A ELF1 L3MBTL2 EML2 piR-32677-240 piR-36393-264 lnc-OPA3-1 piR-43583-272 PPP5D1 PNMA8A NECTIN2 ENSG00000269148 DMWD
GH19J045511 Enhancer 0.3 dbSUPER 5 -129.4 -129444 0.6 MLLT1 ZBTB33 EML2-AS1 PPM1N HSALNG0126570 VASP piR-31199-163
GH19J045235 Enhancer 0.2 Ensembl 5 -406.0 -405963 0.7 LOC100420902 EML2-AS1 EXOC3L2 lnc-TRAPPC6A-3 MARK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EML2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EML2-AS1 Gene

Genomic Locations for EML2-AS1 Gene
chr19:45,641,494-45,642,840
(GRCh38/hg38)
Size:
1,347 bases
Orientation:
Plus strand
chr19:46,144,752-46,146,098
(GRCh37/hg19)
Size:
1,347 bases
Orientation:
Plus strand

Genomic View for EML2-AS1 Gene

Genes around EML2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EML2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EML2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EML2-AS1 Gene

Proteins for EML2-AS1 Gene

Post-translational modifications for EML2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EML2-AS1 Gene

Domains & Families for EML2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EML2-AS1 Gene

Function for EML2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EML2-AS1 Gene

Localization for EML2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EML2-AS1 Gene

Pathways & Interactions for EML2-AS1 Gene

PathCards logo

SuperPathways for EML2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EML2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EML2-AS1 Gene

Drugs & Compounds for EML2-AS1 Gene

No Compound Related Data Available

Transcripts for EML2-AS1 Gene

mRNA/cDNA for EML2-AS1 Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EML2-AS1 Gene

No ASD Table

Relevant External Links for EML2-AS1 Gene

GeneLoc Exon Structure for
EML2-AS1
ECgene alternative splicing isoforms for
EML2-AS1

Expression for EML2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EML2-AS1 Gene

Orthologs for EML2-AS1 Gene

Evolution for EML2-AS1 Gene

ENSEMBL:
Gene Tree for EML2-AS1 (if available)
TreeFam:
Gene Tree for EML2-AS1 (if available)

No data available for Orthologs for EML2-AS1 Gene

Paralogs for EML2-AS1 Gene

No data available for Paralogs for EML2-AS1 Gene

Variants for EML2-AS1 Gene

Sequence variations from dbSNP and Humsavar for EML2-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000933403 -- 45,642,574(+) G/C non_coding_transcript_variant
rs1001065477 -- 45,643,202(+) A/G downstream_transcript_variant
rs1001139067 -- 45,640,129(+) T/A/C upstream_transcript_variant
rs1001211057 -- 45,639,879(+) A/G upstream_transcript_variant
rs1002144815 -- 45,641,247(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for EML2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833848 CNV loss 17160897

Variation tolerance for EML2-AS1 Gene

Gene Damage Index Score: 2.99; 49.72% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for EML2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EML2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EML2-AS1 Gene

Disorders for EML2-AS1 Gene

Additional Disease Information for EML2-AS1

No disorders were found for EML2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EML2-AS1 Gene

Publications for EML2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for EML2-AS1 Gene

Products for EML2-AS1 Gene

Sources for EML2-AS1 Gene