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Aliases for EMC3-AS1 Gene

Subcategory (RNA class) for EMC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EMC3-AS1 Gene

  • EMC3 Antisense RNA 1 2 3 5

External Ids for EMC3-AS1 Gene

Previous GeneCards Identifiers for EMC3-AS1 Gene

  • GC03P010042

Summaries for EMC3-AS1 Gene

GeneCards Summary for EMC3-AS1 Gene

EMC3-AS1 (EMC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EMC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMC3-AS1 Gene

Genomics for EMC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for EMC3-AS1 Gene

Promoters and enhancers for EMC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J009985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 660.9 +0.2 239 2.5 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 EMC3-AS1 EMC3 BRPF1 FANCD2 SETD5 BRK1 GHRLOS RNU6-670P FANCD2OS PRRT3
GH03J010247 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.7 +262.3 262333 3 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 TATDN2 ENSG00000272410 PIR32642 PIR57492 PIR49172 PIR36484 PIR45247 SETD5 BRPF1 EMC3-AS1
GH03J009394 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 26.4 -587.9 -587902 9.8 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SETD5 THUMPD3-AS1 GC03P009403 BRPF1 RAD18 TTLL3 GHRLOS FANCD2 SRGAP3-AS3 JAGN1
GH03J009889 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.5 -96.1 -96075 2.4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B JAGN1 CIDEC BRPF1 RAD18 SETD5 FANCD2 LINC00852 TTLL3 GHRLOS SEC13
GH03J009730 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.1 -254.9 -254859 3 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 NFYC BRPF1 SETD5 SRGAP3-AS3 THUMPD3-AS1 CYCSP10 SRGAP3-AS1 ENSG00000269886 RAD18 EMC3-AS1 ENSG00000269894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EMC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EMC3-AS1 Gene

Genomic Locations for EMC3-AS1 Gene
chr3:9,986,893-10,007,004
(GRCh38/hg38)
Size:
20,112 bases
Orientation:
Plus strand
chr3:10,028,577-10,048,674
(GRCh37/hg19)

Genomic View for EMC3-AS1 Gene

Genes around EMC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EMC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EMC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMC3-AS1 Gene

Function for EMC3-AS1 Gene

Phenotypes From GWAS Catalog for EMC3-AS1 Gene

Phenotypes for EMC3-AS1 Gene

genes like me logo Genes that share phenotypes with EMC3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EMC3-AS1 Gene

Localization for EMC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EMC3-AS1 Gene

Pathways & Interactions for EMC3-AS1 Gene

SuperPathways for EMC3-AS1 Gene

No Data Available

Interacting Proteins for EMC3-AS1 Gene

Gene Ontology (GO) - Biological Process for EMC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EMC3-AS1 Gene

Drugs & Compounds for EMC3-AS1 Gene

No Compound Related Data Available

Transcripts for EMC3-AS1 Gene

mRNA/cDNA for EMC3-AS1 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for EMC3-AS1 Gene

No ASD Table

Relevant External Links for EMC3-AS1 Gene

GeneLoc Exon Structure for
EMC3-AS1
ECgene alternative splicing isoforms for
EMC3-AS1

Expression for EMC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EMC3-AS1 Gene

genes like me logo Genes that share expression patterns with EMC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EMC3-AS1 Gene

Orthologs for EMC3-AS1 Gene

Evolution for EMC3-AS1 Gene

ENSEMBL:
Gene Tree for EMC3-AS1 (if available)
TreeFam:
Gene Tree for EMC3-AS1 (if available)

No data available for Orthologs for EMC3-AS1 Gene

Paralogs for EMC3-AS1 Gene

No data available for Paralogs for EMC3-AS1 Gene

Variants for EMC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for EMC3-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000289192 -- 10,007,052(+) T/C downstream_transcript_variant
rs1000374148 -- 9,986,414(+) C/T upstream_transcript_variant
rs1000678041 -- 10,004,105(+) G/T non_coding_transcript_variant
rs1000765082 -- 9,990,789(+) A/G intron_variant
rs1000783703 -- 10,004,676(+) T/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for EMC3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2661208 CNV deletion 23128226
esv2724891 CNV deletion 23290073
esv3595257 CNV loss 21293372
nsv1013567 CNV loss 25217958
nsv1073204 CNV deletion 25765185
nsv523205 CNV loss 19592680
nsv589648 CNV loss 21841781
nsv965142 CNV duplication 23825009
nsv965143 CNV duplication 23825009
nsv966988 CNV duplication 23825009

Additional Variant Information for EMC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EMC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EMC3-AS1 Gene

Disorders for EMC3-AS1 Gene

Additional Disease Information for EMC3-AS1

No disorders were found for EMC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EMC3-AS1 Gene

Publications for EMC3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for EMC3-AS1 Gene

Sources for EMC3-AS1 Gene

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