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Aliases for EMBP1 Gene

Aliases for EMBP1 Gene

  • Embigin Pseudogene 1 2 3 5

External Ids for EMBP1 Gene

Previous GeneCards Identifiers for EMBP1 Gene

  • GC01P121262
  • GC01P118581

Summaries for EMBP1 Gene

GeneCards Summary for EMBP1 Gene

EMBP1 (Embigin Pseudogene 1) is a Pseudogene.

Additional gene information for EMBP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EMBP1 Gene

Genomics for EMBP1 Gene

GeneHancer (GH) Regulatory Elements for EMBP1 Gene

Promoters and enhancers for EMBP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I121518 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 +0.2 211 1.9 FOXA2 ZNF493 ZNF133 DMAP1 ZNF2 ZNF48 GLIS2 KLF7 SP3 RXRA EMBP1 ENSG00000272583 GC01M121519 HIST2H2BA ENSG00000227082
GH01I121557 Enhancer 0.8 Ensembl ENCODE 0.3 +39.4 39351 1.5 HDAC1 BACH1 MAFG FEZF1 ZNF316 ZNF512 NFE2 KDM1A PRDM1 EMSY SRGAP2C LINC01691 EMBP1 GC01M121519
GH01I121529 Enhancer 0.2 Ensembl 0.4 +10.2 10189 0.2 GC01M121519 EMBP1 LINC01691
GH01I121550 Enhancer 0.2 ENCODE 0.3 +32.3 32332 1.5 ENSG00000227082 LINC01691 EMBP1 GC01M121519
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EMBP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EMBP1 Gene

Genomic Locations for EMBP1 Gene
chr1:121,519,112-121,571,892
(GRCh38/hg38)
Size:
52,781 bases
Orientation:
Plus strand
chr1:121,260,910-121,313,686
(GRCh37/hg19)

Genomic View for EMBP1 Gene

Genes around EMBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EMBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EMBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EMBP1 Gene

Proteins for EMBP1 Gene

Post-translational modifications for EMBP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EMBP1 Gene

Domains & Families for EMBP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EMBP1 Gene

Function for EMBP1 Gene

Phenotypes From GWAS Catalog for EMBP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EMBP1 Gene

Localization for EMBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EMBP1 Gene

Pathways & Interactions for EMBP1 Gene

SuperPathways for EMBP1 Gene

No Data Available

Interacting Proteins for EMBP1 Gene

Gene Ontology (GO) - Biological Process for EMBP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EMBP1 Gene

Drugs & Compounds for EMBP1 Gene

No Compound Related Data Available

Transcripts for EMBP1 Gene

mRNA/cDNA for EMBP1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EMBP1 Gene

Embigin pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EMBP1 Gene

No ASD Table

Relevant External Links for EMBP1 Gene

GeneLoc Exon Structure for
EMBP1
ECgene alternative splicing isoforms for
EMBP1

Expression for EMBP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EMBP1 Gene

mRNA differential expression in normal tissues according to GTEx for EMBP1 Gene

This gene is overexpressed in Liver (x8.1) and Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of EMBP1 Gene:

EMBP1

SOURCE GeneReport for Unigene cluster for EMBP1 Gene:

Hs.697682
genes like me logo Genes that share expression patterns with EMBP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EMBP1 Gene

Orthologs for EMBP1 Gene

Evolution for EMBP1 Gene

ENSEMBL:
Gene Tree for EMBP1 (if available)
TreeFam:
Gene Tree for EMBP1 (if available)

No data available for Orthologs for EMBP1 Gene

Paralogs for EMBP1 Gene

No data available for Paralogs for EMBP1 Gene

Variants for EMBP1 Gene

Sequence variations from dbSNP and Humsavar for EMBP1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001521285 -- 121,517,175(+) C/A upstream_transcript_variant
rs1002181466 -- 121,532,144(+) A/G intron_variant
rs1005550901 -- 121,517,165(+) A/C upstream_transcript_variant
rs1008812364 -- 121,538,317(+) T/C intron_variant
rs1014295654 -- 121,532,169(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EMBP1 Gene

Variant ID Type Subtype PubMed ID
nsv946206 CNV duplication 23825009
nsv547635 CNV gain 21841781
nsv547634 CNV gain 21841781
nsv524681 CNV gain 19592680
nsv521003 CNV gain 19592680
esv3578137 CNV loss 25503493
esv2761521 CNV gain 21179565
dgv86e212 CNV gain 25503493
dgv6e55 CNV gain 17911159
dgv527n54 CNV gain 21841781
dgv37e214 CNV gain 21293372
dgv31n27 CNV gain 19166990
dgv311n100 CNV gain 25217958
dgv310n100 CNV gain 25217958
dgv309n100 CNV gain 25217958
dgv308n100 CNV gain 25217958

Additional Variant Information for EMBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EMBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EMBP1 Gene

Disorders for EMBP1 Gene

Additional Disease Information for EMBP1

No disorders were found for EMBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EMBP1 Gene

Publications for EMBP1 Gene

  1. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K … Easton DF (Nature genetics 2013) 3 58
  2. A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). (PMID: 19330030) Thomas G … Hunter DJ (Nature genetics 2009) 3 58

Products for EMBP1 Gene

Sources for EMBP1 Gene

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