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Aliases for ELOVL2-AS1 Gene

Subcategory (RNA class) for ELOVL2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ELOVL2-AS1 Gene

  • ELOVL2 Antisense RNA 1 2 3 5
  • ELOVL2 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ELOVL2-AS1 Gene

Previous GeneCards Identifiers for ELOVL2-AS1 Gene

  • GC06P011046
  • GC06P011049
  • GC06P011052
  • GC06P011053
  • GC06P011056
  • GC06P011059
  • GC06P011062
  • GC06P011065
  • GC06P011068
  • GC06P011071
  • GC06P011074

Summaries for ELOVL2-AS1 Gene

GeneCards Summary for ELOVL2-AS1 Gene

ELOVL2-AS1 (ELOVL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ELOVL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELOVL2-AS1 Gene

Genomics for ELOVL2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ELOVL2-AS1 Gene

Promoters and enhancers for ELOVL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J011042 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 0.0 -17 2.3 PKNOX1 ARNT ARID4B SIN3A ZNF2 ZNF766 CBX5 ZNF213 ZNF416 ZNF143 ELOVL2 ELOVL2-AS1 PIR47110 RNA5SP203 TFAP2A-AS1 SYCP2L GCM2 ENSG00000235051 HIVEP1 ERVFRD-1
GH06J011044 Promoter 1.1 EPDnew 650.7 +1.2 1218 0.1 ZNF133 RAD21 RARA ZNF766 CBX5 ZNF143 RCOR1 CREM SMARCA5 ZNF202 ELOVL2 ELOVL2-AS1 PIR47110 RNA5SP203 HIVEP1 PIR31848
GH06J011010 Enhancer 1.3 Ensembl ENCODE dbSUPER 20.1 -31.5 -31548 3.3 FOXA2 MLX ARID4B SIN3A DMAP1 ETS1 YY1 SLC30A9 DEK RXRA ELOVL2-AS1 SYCP2L ELOVL2 GCM2 ENSG00000235051 LOC100421248 LOC101928191
GH06J011007 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 -34.9 -34948 3 FOXA2 MLX ARID4B SIN3A DMAP1 ETS1 RUNX3 MXD4 REST NFIL3 ELOVL2-AS1 ELOVL2 SYCP2L LOC100421248 LOC101928191
GH06J010951 Enhancer 1 Ensembl ENCODE 10.8 -91.6 -91555 0.7 FOXA2 ARID4B BMI1 ZSCAN9 RAD21 RFX5 FOS RUNX3 THAP11 KLF11 ELOVL2 ELOVL2-AS1 SYCP2L LOC101928191 GC06M010903
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ELOVL2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ELOVL2-AS1 Gene

Genomic Locations for ELOVL2-AS1 Gene
chr6:11,043,524-11,079,144
(GRCh38/hg38)
Size:
35,621 bases
Orientation:
Plus strand
chr6:11,043,757-11,079,377
(GRCh37/hg19)

Genomic View for ELOVL2-AS1 Gene

Genes around ELOVL2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELOVL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELOVL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELOVL2-AS1 Gene

Proteins for ELOVL2-AS1 Gene

Post-translational modifications for ELOVL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ELOVL2-AS1 Gene

Domains & Families for ELOVL2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ELOVL2-AS1 Gene

Function for ELOVL2-AS1 Gene

Phenotypes From GWAS Catalog for ELOVL2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ELOVL2-AS1 Gene

Localization for ELOVL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ELOVL2-AS1 Gene

Pathways & Interactions for ELOVL2-AS1 Gene

SuperPathways for ELOVL2-AS1 Gene

No Data Available

Interacting Proteins for ELOVL2-AS1 Gene

Gene Ontology (GO) - Biological Process for ELOVL2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ELOVL2-AS1 Gene

Drugs & Compounds for ELOVL2-AS1 Gene

No Compound Related Data Available

Transcripts for ELOVL2-AS1 Gene

mRNA/cDNA for ELOVL2-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Unigene Clusters for ELOVL2-AS1 Gene

ELOVL2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ELOVL2-AS1 Gene

No ASD Table

Relevant External Links for ELOVL2-AS1 Gene

GeneLoc Exon Structure for
ELOVL2-AS1
ECgene alternative splicing isoforms for
ELOVL2-AS1

Expression for ELOVL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ELOVL2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ELOVL2-AS1 Gene

This gene is overexpressed in Testis (x14.8) and Brain - Spinal cord (cervical c-1) (x7.8).

SOURCE GeneReport for Unigene cluster for ELOVL2-AS1 Gene:

Hs.43818
genes like me logo Genes that share expression patterns with ELOVL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ELOVL2-AS1 Gene

Orthologs for ELOVL2-AS1 Gene

Evolution for ELOVL2-AS1 Gene

ENSEMBL:
Gene Tree for ELOVL2-AS1 (if available)
TreeFam:
Gene Tree for ELOVL2-AS1 (if available)

No data available for Orthologs for ELOVL2-AS1 Gene

Paralogs for ELOVL2-AS1 Gene

No data available for Paralogs for ELOVL2-AS1 Gene

Variants for ELOVL2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ELOVL2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000078669 -- 11,043,841(+) G/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000267483 -- 11,063,291(+) A/G intron_variant
rs1000277838 -- 11,076,799(+) C/T intron_variant
rs1000390645 -- 11,050,826(+) T/C/G intron_variant
rs1000397855 -- 11,056,213(+) AAAA/AAAAAA intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ELOVL2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv998n67 CNV loss 20364138
esv2670783 CNV deletion 23128226
esv3450093 CNV insertion 20981092
esv3608088 CNV loss 21293372
esv3608089 CNV loss 21293372
nsv1074909 CNV deletion 25765185
nsv1161335 CNV deletion 26073780
nsv441985 CNV loss 18776908
nsv515027 CNV gain 21397061
nsv5198 CNV insertion 18451855
nsv818401 CNV loss 17921354
nsv823424 CNV loss 20364138

Additional Variant Information for ELOVL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ELOVL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ELOVL2-AS1 Gene

Disorders for ELOVL2-AS1 Gene

Additional Disease Information for ELOVL2-AS1

No disorders were found for ELOVL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ELOVL2-AS1 Gene

Publications for ELOVL2-AS1 Gene

  1. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3 58
  2. Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. (PMID: 21829377) Lemaitre RN … Steffen LM (PLoS genetics 2011) 3 58
  3. Human metabolic individuality in biomedical and pharmaceutical research. (PMID: 21886157) Suhre K … Gieger C (Nature 2011) 3 58
  4. Decoding the fine-scale structure of a breast cancer genome and transcriptome. (PMID: 16461635) Volik S … Collins C (Genome research 2006) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ELOVL2-AS1 Gene

Sources for ELOVL2-AS1 Gene

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