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Aliases for ELMOD3 Gene

Aliases for ELMOD3 Gene

  • ELMO Domain Containing 3 2 3 5
  • RNA-Binding Motif And ELMO Domain-Containing Protein 1 3 4
  • RNA Binding Motif And ELMO/CED-12 Domain 1 2 3
  • Deafness, Autosomal Recessive 88 2 3
  • ELMO/CED-12 Domain Containing 3 2 3
  • RNA-Binding Motif Protein 29 3 4
  • RBED1 3 4
  • RBM29 3 4
  • Liver-Specific Organic Anion Transporter 3TM12 3
  • ELMO Domain-Containing Protein 3 3
  • Organic Anion Transporter LST-3b 3
  • RNA Binding Motif Protein 29 2
  • RNA-Binding Protein 29 4
  • DFNB88 3
  • LST3 3

External Ids for ELMOD3 Gene

Previous HGNC Symbols for ELMOD3 Gene

  • RBM29
  • RBED1
  • DFNB88

Previous GeneCards Identifiers for ELMOD3 Gene

  • GC02P085437
  • GC02P085582
  • GC02P085583
  • GC02P085584
  • GC02P085585
  • GC02P085586
  • GC02P085587
  • GC02P085588

Summaries for ELMOD3 Gene

Entrez Gene Summary for ELMOD3 Gene

  • This gene encodes a member of the engulfment and cell motility family of GTPase-activating proteins that regulate Arf GTPase proteins. Members of this family are defined by a conserved engulfment and cell motility domain. In rat cochlea, the encoded protein is found in stereocilia, kinocilia and cuticular plate of developing hair cells suggesting a function for this protein in cochlear sensory cells. An allelic variant of this family has been associated with autosomal recessive nonsyndromic deafness-88 in humans. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]

GeneCards Summary for ELMOD3 Gene

ELMOD3 (ELMO Domain Containing 3) is a Protein Coding gene. Diseases associated with ELMOD3 include Deafness, Autosomal Recessive 88 and Autosomal Recessive Non-Syndromic Sensorineural Deafness Type Dfnb. Gene Ontology (GO) annotations related to this gene include GTPase activator activity.

UniProtKB/Swiss-Prot for ELMOD3 Gene

  • Acts as a GTPase-activating protein (GAP) for ARL2 with low specific activity.

Additional gene information for ELMOD3 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELMOD3 Gene

Genomics for ELMOD3 Gene

GeneHancer (GH) Regulatory Elements for ELMOD3 Gene

Promoters and enhancers for ELMOD3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I085353 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.2 209 2.6 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 ELMOD3 RETSAT SNORD94 CAPG
GH02I085536 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 28.7 +185.4 185366 6.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 GC02M085541 MAT2A PIR39955 PIR40998 PARTICL SNORD94 USP39 C2orf68 LOC100996506 ELMOD3
GH02I085323 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.9 -28.1 -28085 5.6 MLX DMAP1 YY1 E2F8 ZNF143 SP3 PPARGC1A SSRP1 ZNF610 GLIS1 TGOLN2 RETSAT ELMOD3 LOC100996506 SNORD94 CAPG USP39 C2orf68 SH2D6 VAMP8
GH02I086193 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.7 +841.1 841054 3.9 ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 IMMT ENSG00000273080 GC02P086196 LOC102724642 SNORD94 LOC100420889 ENSG00000231259 USP39 KDM3A LOC105374845
GH02I085497 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 21.4 +145.5 145489 4.7 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 POLR2B ZNF766 CBX5 MAT2A USP39 ELMOD3 SNORD94 RN7SL251P RNU7-64P CAPG TCF7L1 TMEM150A SH2D6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ELMOD3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ELMOD3 gene promoter:

Genomic Locations for ELMOD3 Gene

Genomic Locations for ELMOD3 Gene
37,359 bases
Plus strand

Genomic View for ELMOD3 Gene

Genes around ELMOD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELMOD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELMOD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELMOD3 Gene

Proteins for ELMOD3 Gene

  • Protein details for ELMOD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    ELMO domain-containing protein 3
    Protein Accession:
    Secondary Accessions:
    • B8ZZD6
    • D6W5K4
    • Q2M1K3
    • Q2XSU3
    • Q2XSU4
    • Q8NAC1
    • Q8TCK4
    • Q8WV70
    • Q8WY75
    • Q9H6Q8

    Protein attributes for ELMOD3 Gene

    381 amino acids
    Molecular mass:
    43046 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ELMOD3 Gene


neXtProt entry for ELMOD3 Gene

Post-translational modifications for ELMOD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ELMOD3 Gene

Domains & Families for ELMOD3 Gene

Gene Families for ELMOD3 Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins

Protein Domains for ELMOD3 Gene


Suggested Antigen Peptide Sequences for ELMOD3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ELMOD3: view

No data available for UniProtKB/Swiss-Prot for ELMOD3 Gene

Function for ELMOD3 Gene

Molecular function for ELMOD3 Gene

UniProtKB/Swiss-Prot Function:
Acts as a GTPase-activating protein (GAP) for ARL2 with low specific activity.

Phenotypes From GWAS Catalog for ELMOD3 Gene

Gene Ontology (GO) - Molecular Function for ELMOD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 NOT GTPase activator activity IDA 17452337
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with ELMOD3: view

Phenotypes for ELMOD3 Gene

GenomeRNAi human phenotypes for ELMOD3:
genes like me logo Genes that share phenotypes with ELMOD3: view

Human Phenotype Ontology for ELMOD3 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

miRNA for ELMOD3 Gene

miRTarBase miRNAs that target ELMOD3

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for ELMOD3 Gene

Localization for ELMOD3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ELMOD3 Gene

Cell projection, stereocilium. Cell projection, kinocilium. Cytoplasm, cytoskeleton. Note=Also present in the cuticular plate of auditory hair cells. Expressed along the length of the stereocilia, but excluded from the very tip (By similarity). Colocalizes with F-actin cytoskeleton. {ECO:0000250}.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ELMOD3 gene
Compartment Confidence
cytoskeleton 3
nucleus 3
mitochondrion 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ELMOD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005929 cilium IEA --
GO:0032420 stereocilium IEA --
GO:0042995 cell projection IEA --
genes like me logo Genes that share ontologies with ELMOD3: view

Pathways & Interactions for ELMOD3 Gene

SuperPathways for ELMOD3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ELMOD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with ELMOD3: view

No data available for Pathways by source and SIGNOR curated interactions for ELMOD3 Gene

Drugs & Compounds for ELMOD3 Gene

No Compound Related Data Available

Transcripts for ELMOD3 Gene

Unigene Clusters for ELMOD3 Gene

ELMO/CED-12 domain containing 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ELMOD3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b · 11c ^
SP1: - - - - - - - -
SP2: - -
SP3: - -
SP4: - -
SP5: -
SP6: - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - - - - -
SP10: -
SP12: - - - - - - - - -
SP13: - - - - - - - - - -
SP14: - -
SP15: - - - - - - -
SP16: - - - - -
SP17: - - - - -
SP18: - -
SP19: - - - -
SP20: - -
SP21: - - - - -

ExUns: 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b · 18c
SP1: - -
SP2: -
SP3: - -
SP4: - - -
SP5: - -
SP11: -

Relevant External Links for ELMOD3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ELMOD3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ELMOD3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ELMOD3 Gene

This gene is overexpressed in Urine (45.2) and Liver (22.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ELMOD3 Gene

Protein tissue co-expression partners for ELMOD3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ELMOD3 Gene:


SOURCE GeneReport for Unigene cluster for ELMOD3 Gene:


mRNA Expression by UniProt/SwissProt for ELMOD3 Gene:

Tissue specificity: Both isoform 1 and isoform 6 are widely expressed.

Evidence on tissue expression from TISSUES for ELMOD3 Gene

  • Nervous system(4.6)
  • Lung(4.2)
  • Lymph node(4.2)
  • Spleen(4.2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for ELMOD3 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
  • nervous
  • skeletal muscle
  • skeleton
Head and neck:
  • brain
  • cerebellum
  • cranial nerve
  • ear
  • eye
  • head
  • inner ear
  • middle ear
  • outer ear
  • skull
  • peripheral nerve
  • peripheral nervous system
genes like me logo Genes that share expression patterns with ELMOD3: view

No data available for mRNA differential expression in normal tissues for ELMOD3 Gene

Orthologs for ELMOD3 Gene

This gene was present in the common ancestor of animals.

Orthologs for ELMOD3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ELMOD3 33 34
  • 99.56 (n)
(Canis familiaris)
Mammalia ELMOD3 33 34
  • 89.33 (n)
(Bos Taurus)
Mammalia ELMOD3 33 34
  • 87.46 (n)
(Mus musculus)
Mammalia Elmod3 33 16 34
  • 83.03 (n)
(Rattus norvegicus)
Mammalia Elmod3 33
  • 83.02 (n)
(Ornithorhynchus anatinus)
Mammalia ELMOD3 34
  • 52 (a)
(Monodelphis domestica)
Mammalia ELMOD3 34
  • 41 (a)
(Gallus gallus)
Aves LOC426044 33
  • 66.11 (n)
  • 49 (a)
(Anolis carolinensis)
Reptilia ELMOD3 34
  • 45 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia elmod3 33
  • 61.63 (n)
(Danio rerio)
Actinopterygii LOC100537442 33
  • 60.19 (n)
elmod3 34
  • 53 (a)
(Caenorhabditis elegans)
Secernentea C56G7.3 34
  • 18 (a)
Species where no ortholog for ELMOD3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ELMOD3 Gene

Gene Tree for ELMOD3 (if available)
Gene Tree for ELMOD3 (if available)

Paralogs for ELMOD3 Gene

(4) SIMAP similar genes for ELMOD3 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with ELMOD3: view

No data available for Paralogs for ELMOD3 Gene

Variants for ELMOD3 Gene

Sequence variations from dbSNP and Humsavar for ELMOD3 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs587777040 pathogenic, Deafness, autosomal recessive 88, Deafness, autosomal recessive, 88 (DFNB88) [MIM:615429] 85,389,806(+) T/C coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs1000018937 -- 85,382,205(+) C/T intron_variant
rs1000028798 -- 85,367,268(+) C/T intron_variant
rs1000088707 -- 85,382,488(+) G/C intron_variant
rs1000143009 -- 85,367,000(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ELMOD3 Gene

Variant ID Type Subtype PubMed ID
esv3451881 CNV insertion 20981092
esv3575266 CNV gain 25503493
nsv1114100 CNV deletion 24896259
nsv7314 OTHER inversion 18451855
nsv834282 CNV gain 17160897
nsv834283 CNV loss 17160897

Variation tolerance for ELMOD3 Gene

Residual Variation Intolerance Score: 75.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.30; 70.50% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ELMOD3 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ELMOD3 Gene

Disorders for ELMOD3 Gene

MalaCards: The human disease database

(5) MalaCards diseases for ELMOD3 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards


  • Deafness, autosomal recessive, 88 (DFNB88) [MIM:615429]: A form of non-syndromic deafness characterized by prelingual onset of severe to profound mixed conductive and sensorineural hearing loss. {ECO:0000269 PubMed:24039609}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for ELMOD3

genes like me logo Genes that share disorders with ELMOD3: view

No data available for Genatlas for ELMOD3 Gene

Publications for ELMOD3 Gene

  1. An alteration in ELMOD3, an Arl2 GTPase-activating protein, is associated with hearing impairment in humans. (PMID: 24039609) Jaworek TJ … Riazuddin S (PLoS genetics 2013) 2 3 4 58
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D … Gu J (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 58

Products for ELMOD3 Gene

Sources for ELMOD3 Gene

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