Aliases for ELK2AP Gene

Aliases for ELK2AP Gene

  • ETS Transcription Factor ELK2A, Pseudogene 2 3 5
  • ELK2, Member Of ETS Oncogene Family, Pseudogene 1 2 3
  • ELK2A, Member Of ETS Oncogene Family, Pseudogene 2 3
  • ELK1, Member Of ETS Oncogene Family Pseudogene 3
  • ETS Transcription Factor ELK2A Pseudogene 2
  • ELK2.1 3
  • ELK2P1 3
  • ELK2 3

External Ids for ELK2AP Gene

Previous HGNC Symbols for ELK2AP Gene

  • ELK2
  • ELK2P1

Previous GeneCards Identifiers for ELK2AP Gene

  • GC14M106137

Summaries for ELK2AP Gene

GeneCards Summary for ELK2AP Gene

ELK2AP (ETS Transcription Factor ELK2A, Pseudogene) is a Pseudogene.

Additional gene information for ELK2AP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ELK2AP Gene

Genomics for ELK2AP Gene

GeneHancer (GH) Regulatory Elements for ELK2AP Gene

Promoters and enhancers for ELK2AP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J105677 Enhancer 0.4 Ensembl dbSUPER 0.7 -4.5 -4487 0.8 CTCF TMEM121 ELK2AP LOC105378185 lnc-BRF1-7 DQ083946 lnc-TMEM121-2
GH14J105679 Enhancer 0.3 Ensembl dbSUPER 0.4 -5.3 -5287 0.4 LOC105378185 ELK2AP lnc-BRF1-7 DQ083946 lnc-TMEM121-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ELK2AP on UCSC Golden Path with GeneCards custom track

Genomic Locations for ELK2AP Gene

Genomic Locations for ELK2AP Gene
chr14:105,669,577-105,673,314
(GRCh38/hg38)
Size:
3,738 bases
Orientation:
Minus strand
chr14:106,136,378-106,140,094
(GRCh37/hg19)
Size:
3,717 bases
Orientation:
Minus strand

Genomic View for ELK2AP Gene

Genes around ELK2AP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELK2AP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELK2AP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELK2AP Gene

Proteins for ELK2AP Gene

Post-translational modifications for ELK2AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ELK2AP Gene

Domains & Families for ELK2AP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ELK2AP Gene

Function for ELK2AP Gene

Phenotypes From GWAS Catalog for ELK2AP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ELK2AP Gene

Localization for ELK2AP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ELK2AP Gene

Pathways & Interactions for ELK2AP Gene

PathCards logo

SuperPathways for ELK2AP Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ELK2AP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ELK2AP Gene

Drugs & Compounds for ELK2AP Gene

No Compound Related Data Available

Transcripts for ELK2AP Gene

mRNA/cDNA for ELK2AP Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ELK2AP

Alternative Splicing Database (ASD) splice patterns (SP) for ELK2AP Gene

No ASD Table

Relevant External Links for ELK2AP Gene

GeneLoc Exon Structure for
ELK2AP

Expression for ELK2AP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ELK2AP Gene

mRNA differential expression in normal tissues according to GTEx for ELK2AP Gene

This gene is overexpressed in Testis (x48.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ELK2AP

SOURCE GeneReport for Unigene cluster for ELK2AP Gene:

Hs.744419
genes like me logo Genes that share expression patterns with ELK2AP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ELK2AP Gene

Orthologs for ELK2AP Gene

Evolution for ELK2AP Gene

ENSEMBL:
Gene Tree for ELK2AP (if available)
TreeFam:
Gene Tree for ELK2AP (if available)

No data available for Orthologs for ELK2AP Gene

Paralogs for ELK2AP Gene

No data available for Paralogs for ELK2AP Gene

Variants for ELK2AP Gene

Structural Variations from Database of Genomic Variants (DGV) for ELK2AP Gene

Variant ID Type Subtype PubMed ID
dgv1145n106 CNV deletion 24896259
dgv142e215 CNV deletion 23714750
dgv1981n100 CNV gain 25217958
dgv1982n100 CNV gain 25217958
dgv1983n100 CNV gain 25217958
dgv1984n100 CNV gain 25217958
dgv1985n100 CNV loss 25217958
dgv1986n100 CNV gain+loss 25217958
dgv1987n100 CNV loss 25217958
dgv1988n100 CNV gain 25217958
dgv1989n100 CNV gain 25217958
dgv268n27 CNV loss 19166990
dgv285e201 CNV deletion 23290073
dgv286e201 CNV deletion 23290073
dgv287e201 CNV deletion 23290073
dgv392n67 CNV loss 20364138
dgv3998n54 CNV loss 21841781
dgv39e203 CNV gain+loss 21179565
dgv4001n54 CNV gain 21841781
dgv4002n54 CNV loss 21841781
dgv4005n54 CNV loss 21841781
dgv4006n54 CNV gain 21841781
dgv4007n54 CNV loss 21841781
dgv4008n54 CNV loss 21841781
dgv4009n54 CNV loss 21841781
dgv4010n54 CNV gain 21841781
dgv4013n54 CNV gain 21841781
dgv415e199 CNV deletion 23128226
dgv416e199 CNV deletion 23128226
dgv423e214 CNV loss 21293372
dgv424e214 CNV gain 21293372
dgv50e180 CNV deletion 20482838
dgv678e212 CNV loss 25503493
dgv679e212 CNV loss 25503493
dgv680e212 CNV gain 25503493
esv2659213 CNV deletion 23128226
esv27023 CNV gain+loss 19812545
esv2749301 CNV deletion 23290073
esv29955 CNV loss 18421352
esv29981 CNV gain 17803354
esv32669 CNV gain+loss 17666407
esv3568731 CNV gain 25503493
esv3568742 CNV gain 25503493
esv3581458 CNV loss 25503493
esv3581459 CNV loss 25503493
esv3635652 CNV loss 21293372
esv3635653 CNV loss 21293372
esv3892584 CNV gain 25118596
esv3892586 CNV gain+loss 25118596
esv3892587 CNV gain+loss 25118596
esv3892589 CNV loss 25118596
esv9379 CNV loss 19470904
nsv1039570 CNV gain 25217958
nsv1048211 CNV loss 25217958
nsv1048717 CNV loss 25217958
nsv1053673 CNV loss 25217958
nsv1054190 CNV gain 25217958
nsv1148050 CNV deletion 26484159
nsv1443 CNV deletion 18451855
nsv435649 CNV deletion 17901297
nsv436183 CNV deletion 17901297
nsv436188 CNV deletion 17901297
nsv456468 CNV loss 19166990
nsv456477 CNV loss 19166990
nsv517055 CNV gain+loss 19592680
nsv566278 CNV gain+loss 21841781
nsv566302 CNV gain 21841781
nsv566336 CNV loss 21841781
nsv566340 CNV gain 21841781
nsv566341 CNV loss 21841781
nsv566346 CNV gain 21841781
nsv566347 CNV loss 21841781
nsv566348 CNV loss 21841781
nsv566349 CNV loss 21841781
nsv566350 CNV loss 21841781
nsv566351 CNV loss 21841781
nsv7258 OTHER inversion 18451855
nsv817648 CNV loss 17921354
nsv817649 CNV loss 17921354
nsv819048 CNV gain 19587683
nsv976374 CNV duplication 23825009

Additional Variant Information for ELK2AP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ELK2AP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for ELK2AP Gene

Disorders for ELK2AP Gene

Additional Disease Information for ELK2AP

No disorders were found for ELK2AP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ELK2AP Gene

Publications for ELK2AP Gene

  1. Structural organization of the human Elk1 gene and its processed pseudogene Elk2. (PMID: 10231026) Yamauchi T … Isobe M (DNA research : an international journal for rapid publication of reports on genes and genomes 1999) 2 3 54
  2. The human elk-1 gene family: the functional gene and two processed pseudogenes embedded in the IgH locus. (PMID: 9795224) Harindranath N … Max EE (Gene 1998) 2 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  5. Locations of the ets subfamily members net, elk1, and sap1 (ELK3, ELK1, and ELK4) on three homologous regions of the mouse and human genomes. (PMID: 8575773) Giovane A … Wasylyk B (Genomics 1995) 3 54

Products for ELK2AP Gene

Sources for ELK2AP Gene