Aliases for ELFN1-AS1 Gene

Subcategory (RNA class) for ELFN1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ELFN1-AS1 Gene

  • ELFN1 Antisense RNA 1 2 3 5
  • ELFN1-AS1 2 168
  • NONHSAG046781 92
  • HSALNG0055679 167
  • MYCLo-2 3

External Ids for ELFN1-AS1 Gene

Previous GeneCards Identifiers for ELFN1-AS1 Gene

  • GC07M001780

Summaries for ELFN1-AS1 Gene

GeneCards Summary for ELFN1-AS1 Gene

ELFN1-AS1 (ELFN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ELFN1-AS1 include Granular Cell Carcinoma and Papillary Transitional Carcinoma.

Additional gene information for ELFN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ELFN1-AS1 Gene

Genomics for ELFN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ELFN1-AS1 Gene

Promoters and enhancers for ELFN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J001741 Promoter/Enhancer 1.3 Ensembl ENCODE 505 -0.1 -63 2.3 POLR2G GTF2E2 ZIC2 ZBTB11 ZNF423 HES1 TOE1 MYC CTBP1 POLR2A ELFN1-AS1 JX046910 RF00017-5962 hsa-miR-5096-070 ELFN1
GH07J001740 Enhancer 0.4 Ensembl 500.7 +1.9 1909 0.4 ZIC2 GLIS1 KLF1 ELFN1-AS1 JX046910 RF00017-5962 LOC105375124 ELFN1
GH07J001755 Enhancer 0.6 Ensembl 0.4 -14.1 -14115 1.6 TCF12 USF1 NANOG NR2F1 MITF TOE1 RARA ETV4 HNF1A SP1 HSALNG0055680 hsa-miR-5096-070 MRM2 ELFN1-AS1
GH07J001748 Enhancer 0.5 Ensembl 0.4 -6.7 -6691 2.4 ZIC2 SP2 POLR2A ZFHX2 GLIS1 KLF1 EGR2 EZH2 ZBTB33 ELF1 ELFN1-AS1 hsa-miR-5096-070 ELFN1
GH07J001753 Enhancer 0.5 Ensembl 0.4 -11.0 -10999 0.6 IRF1 ELF4 E4F1 GABPB1 MYC MAX E2F1 HNRNPLL ELF1 BRAT1 INTS1 hsa-miR-5096-070 ELFN1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ELFN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ELFN1-AS1 Gene

Genomic Locations for ELFN1-AS1 Gene
chr7:1,727,354-1,742,310
(GRCh38/hg38)
Size:
14,957 bases
Orientation:
Minus strand
chr7:1,778,266-1,781,927
(GRCh37/hg19)
Size:
3,662 bases
Orientation:
Minus strand

Genomic View for ELFN1-AS1 Gene

Genes around ELFN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELFN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELFN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELFN1-AS1 Gene

Proteins for ELFN1-AS1 Gene

Post-translational modifications for ELFN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ELFN1-AS1 Gene

Domains & Families for ELFN1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ELFN1-AS1 Gene

Function for ELFN1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ELFN1-AS1 Gene

Localization for ELFN1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ELFN1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ELFN1-AS1 Gene

Pathways & Interactions for ELFN1-AS1 Gene

PathCards logo

SuperPathways for ELFN1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ELFN1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ELFN1-AS1 Gene

Drugs & Compounds for ELFN1-AS1 Gene

No Compound Related Data Available

Transcripts for ELFN1-AS1 Gene

mRNA/cDNA for ELFN1-AS1 Gene

13 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ELFN1-AS1 Gene

No ASD Table

Relevant External Links for ELFN1-AS1 Gene

GeneLoc Exon Structure for
ELFN1-AS1

Expression for ELFN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ELFN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ELFN1-AS1 Gene

This gene is overexpressed in Spleen (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ELFN1-AS1

genes like me logo Genes that share expression patterns with ELFN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ELFN1-AS1 Gene

Orthologs for ELFN1-AS1 Gene

Evolution for ELFN1-AS1 Gene

ENSEMBL:
Gene Tree for ELFN1-AS1 (if available)
TreeFam:
Gene Tree for ELFN1-AS1 (if available)

No data available for Orthologs for ELFN1-AS1 Gene

Paralogs for ELFN1-AS1 Gene

No data available for Paralogs for ELFN1-AS1 Gene

Variants for ELFN1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ELFN1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ELFN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv464248 CNV gain 19166990
nsv605825 CNV gain 21841781
nsv830881 CNV loss 17160897
nsv950787 CNV deletion 24416366

Additional Variant Information for ELFN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ELFN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ELFN1-AS1 Gene

Disorders for ELFN1-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ELFN1-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
granular cell carcinoma
  • granular cell adenocarcinoma
papillary transitional carcinoma
  • papillary transitional cell carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ELFN1-AS1

genes like me logo Genes that share disorders with ELFN1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ELFN1-AS1 Gene

Publications for ELFN1-AS1 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T … Croce CM (Journal of the National Cancer Institute 2015) 2 3 54
  2. ELFN1-AS1: a novel primate gene with possible microRNA function expressed predominantly in human tumors. (PMID: 24707484) Polev DE … Kozlov AP (BioMed research international 2014) 2 3 54

Products for ELFN1-AS1 Gene

Sources for ELFN1-AS1 Gene