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Aliases for ELF3-AS1 Gene

Subcategory (RNA class) for ELF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ELF3-AS1 Gene

  • ELF3 Antisense RNA 1 2 3 5

External Ids for ELF3-AS1 Gene

Summaries for ELF3-AS1 Gene

GeneCards Summary for ELF3-AS1 Gene

ELF3-AS1 (ELF3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with ELF3-AS1 include Thyroid Cancer, Nonmedullary, 1.

Additional gene information for ELF3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ELF3-AS1 Gene

Genomics for ELF3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ELF3-AS1 Gene

Promoters and enhancers for ELF3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J201498 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 32.2 +507.2 507212 10.2 PKNOX1 FOXA2 ZFP64 NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 CSRP1 IPO9-AS1 ELF3-AS1 IPO9 RNPEP ENSG00000273478 DDX59 RPS10P7 NAV1 LMOD1
GH01J202157 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 28.8 -151.8 -151760 8.9 HDGF PKNOX1 SMAD1 ARNT YBX1 YY1 POLR2B ZNF766 CBX5 E2F8 PTPN7 RNPEP KDM5B ENSG00000273478 ELF3-AS1 IPO9-AS1 IPO9 HNRNPA1P59 RPS27P8 CYB5R1
GH01J201982 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 29.3 +27.2 27244 2.1 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 RNPEP ELF3-AS1 ENSG00000273478 IPO9-AS1 HNRNPA1P59 RPS27P8 IPO9 KDM5B
GH01J202074 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 29.1 -66.3 -66348 3.9 HDGF PKNOX1 SMAD1 FOXA2 ARNT ZNF766 FOS SP5 REST MEF2D ELF3-AS1 RNPEP ENSG00000273478 HNRNPA1P59 KDM5B RPS27P8 TIMM17A PPP1R12B ELF3 ENSG00000212512
GH01J202042 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 30.1 -35.5 -35480 7.5 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A ZBTB7B ZNF48 ELF3-AS1 RNPEP ENSG00000273478 ELF3 HNRNPA1P59 ENSG00000249007 RPS27P8 LMOD1 LGR6 PPP1R12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ELF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ELF3-AS1 Gene

Genomic Locations for ELF3-AS1 Gene
chr1:202,000,094-202,010,353
(GRCh38/hg38)
Size:
10,260 bases
Orientation:
Minus strand
chr1:201,969,222-201,979,481
(GRCh37/hg19)

Genomic View for ELF3-AS1 Gene

Genes around ELF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ELF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ELF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ELF3-AS1 Gene

Function for ELF3-AS1 Gene

Phenotypes From GWAS Catalog for ELF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ELF3-AS1 Gene

Localization for ELF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ELF3-AS1 Gene

Pathways & Interactions for ELF3-AS1 Gene

SuperPathways for ELF3-AS1 Gene

No Data Available

Interacting Proteins for ELF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ELF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ELF3-AS1 Gene

Drugs & Compounds for ELF3-AS1 Gene

No Compound Related Data Available

Transcripts for ELF3-AS1 Gene

mRNA/cDNA for ELF3-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ELF3-AS1 Gene

No ASD Table

Relevant External Links for ELF3-AS1 Gene

GeneLoc Exon Structure for
ELF3-AS1
ECgene alternative splicing isoforms for
ELF3-AS1

Expression for ELF3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ELF3-AS1 Gene

Orthologs for ELF3-AS1 Gene

Evolution for ELF3-AS1 Gene

ENSEMBL:
Gene Tree for ELF3-AS1 (if available)
TreeFam:
Gene Tree for ELF3-AS1 (if available)

No data available for Orthologs for ELF3-AS1 Gene

Paralogs for ELF3-AS1 Gene

No data available for Paralogs for ELF3-AS1 Gene

Variants for ELF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ELF3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000191631 -- 202,002,151(-) C/A intron_variant
rs1000617976 -- 202,009,961(-) C/T non_coding_transcript_variant
rs1000929300 -- 202,005,876(-) C/G intron_variant
rs1001307407 -- 202,000,083(-) A/T downstream_transcript_variant
rs1001890802 -- 202,008,686(-) G/T intron_variant

Additional Variant Information for ELF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ELF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ELF3-AS1 Gene

Disorders for ELF3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ELF3-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ELF3-AS1

genes like me logo Genes that share disorders with ELF3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ELF3-AS1 Gene

Publications for ELF3-AS1 Gene

  1. Circulating Long Non-Coding RNAs Act as Biomarkers for Predicting 131I Uptake and Mortality in Papillary Thyroid Cancer Patients with Lung Metastases. (PMID: 27997908) Qiu ZL … Luo QY (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2016) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ELF3-AS1 Gene

Sources for ELF3-AS1 Gene

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