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Aliases for EIPR1-IT1 Gene

Subcategory (RNA class) for EIPR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EIPR1-IT1 Gene

  • EIPR1 Intronic Transcript 1 2 3 5
  • TSSC1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • TSSC1 Intronic Transcript 1 2
  • TSSC1-IT1 3

External Ids for EIPR1-IT1 Gene

Previous HGNC Symbols for EIPR1-IT1 Gene

  • TSSC1-IT1

Summaries for EIPR1-IT1 Gene

GeneCards Summary for EIPR1-IT1 Gene

EIPR1-IT1 (EIPR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EIPR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EIPR1-IT1 Gene

Genomics for EIPR1-IT1 Gene

GeneHancer (GH) Regulatory Elements for EIPR1-IT1 Gene

Promoters and enhancers for EIPR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J003302 Enhancer 1.1 Ensembl ENCODE 0.7 -2.1 -2142 1.3 CLOCK ATF1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 RPS7 EIPR1-IT1 GC02M003336 EIPR1
GH02J003276 Enhancer 0.4 FANTOM5 0.3 +24.5 24466 0.2 EGR1 EGR2 EIPR1 GC02M003270 EIPR1-IT1
GH02J003334 Enhancer 0.3 ENCODE 0.3 -33.8 -33795 1.7 ZBTB33 TRAPPC12 GC02M003336 EIPR1-IT1 EIPR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EIPR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EIPR1-IT1 Gene

Genomic Locations for EIPR1-IT1 Gene
chr2:3,298,341-3,301,465
(GRCh38/hg38)
Size:
3,125 bases
Orientation:
Minus strand
chr2:3,302,112-3,305,236
(GRCh37/hg19)
Size:
3,125 bases
Orientation:
Minus strand

Genomic View for EIPR1-IT1 Gene

Genes around EIPR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EIPR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EIPR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for EIPR1-IT1 Gene

Proteins for EIPR1-IT1 Gene

Post-translational modifications for EIPR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EIPR1-IT1 Gene

Domains & Families for EIPR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EIPR1-IT1 Gene

Function for EIPR1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EIPR1-IT1 Gene

Localization for EIPR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EIPR1-IT1 Gene

Pathways & Interactions for EIPR1-IT1 Gene

SuperPathways for EIPR1-IT1 Gene

No Data Available

Interacting Proteins for EIPR1-IT1 Gene

Gene Ontology (GO) - Biological Process for EIPR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EIPR1-IT1 Gene

Drugs & Compounds for EIPR1-IT1 Gene

No Compound Related Data Available

Transcripts for EIPR1-IT1 Gene

mRNA/cDNA for EIPR1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for EIPR1-IT1 Gene

No ASD Table

Relevant External Links for EIPR1-IT1 Gene

GeneLoc Exon Structure for
EIPR1-IT1
ECgene alternative splicing isoforms for
EIPR1-IT1

Expression for EIPR1-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EIPR1-IT1 Gene

Orthologs for EIPR1-IT1 Gene

Evolution for EIPR1-IT1 Gene

ENSEMBL:
Gene Tree for EIPR1-IT1 (if available)
TreeFam:
Gene Tree for EIPR1-IT1 (if available)

No data available for Orthologs for EIPR1-IT1 Gene

Paralogs for EIPR1-IT1 Gene

No data available for Paralogs for EIPR1-IT1 Gene

Variants for EIPR1-IT1 Gene

Additional Variant Information for EIPR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EIPR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EIPR1-IT1 Gene

Disorders for EIPR1-IT1 Gene

No disorders were found for EIPR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EIPR1-IT1 Gene

Publications for EIPR1-IT1 Gene

No publications were found for EIPR1-IT1 Gene.

Products for EIPR1-IT1 Gene

Sources for EIPR1-IT1 Gene

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