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Aliases for EIF3J-DT Gene

Subcategory (RNA class) for EIF3J-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EIF3J-DT Gene

  • EIF3J Divergent Transcript 2 3
  • EIF3J Antisense RNA 1 (Head To Head) 2 3 5
  • EIF3J-AS1 3 5

External Ids for EIF3J-DT Gene

Previous HGNC Symbols for EIF3J-DT Gene

  • EIF3J-AS1

Summaries for EIF3J-DT Gene

GeneCards Summary for EIF3J-DT Gene

EIF3J-DT (EIF3J Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EIF3J-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EIF3J-DT Gene

Genomics for EIF3J-DT Gene

GeneHancer (GH) Regulatory Elements for EIF3J-DT Gene

Promoters and enhancers for EIF3J-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J044535 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.3 -263 3.5 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B EIF3J EIF3J-DT ENSG00000259659
GH15J045197 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 10.4 -663.0 -663003 4.3 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 NFYC MEF2D SHF ENSG00000259932 TRH-GTG1-7 TRH-GTG1-8 TRH-GTG1-9 CTDSPL2 ENSG00000259563 SPG11 SPATA5L1 DUOX1
GH15J044286 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 4.8 +248.1 248130 3.7 HDGF PKNOX1 SMAD1 NEUROD1 SIN3A FEZF1 DMAP1 IRF4 YY1 ZNF207 GC15M044288 CASC4 CTDSPL2 LCMT2 ENSG00000259563 ZSCAN29 WDR76 SPG11 TUBGCP4 ENSG00000249839
GH15J044307 Enhancer 0.8 ENCODE 5.1 +228.4 228370 1.6 ZNF133 STAT5A BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 EIF3J-DT ENSG00000259659 CASC4 GC15M044288 GC15P044263 GAPDHP43
GH15J044300 Enhancer 0.7 ENCODE 5.1 +236.3 236310 0.8 HDGF MEIS2 PKNOX1 YBX1 ZNF316 ZNF366 ATF7 IKZF2 MTA2 NR2F1 EIF3J-DT GC15M044288 CASC4 GC15P044263 GAPDHP43
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EIF3J-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for EIF3J-DT Gene

Genomic Locations for EIF3J-DT Gene
chr15:44,527,257-44,536,923
(GRCh38/hg38)
Size:
9,667 bases
Orientation:
Minus strand
chr15:44,819,455-44,829,121
(GRCh37/hg19)
Size:
9,667 bases
Orientation:
Minus strand

Genomic View for EIF3J-DT Gene

Genes around EIF3J-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EIF3J-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EIF3J-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EIF3J-DT Gene

Function for EIF3J-DT Gene

Phenotypes for EIF3J-DT Gene

genes like me logo Genes that share phenotypes with EIF3J-DT: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EIF3J-DT Gene

Localization for EIF3J-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EIF3J-DT Gene

Pathways & Interactions for EIF3J-DT Gene

SuperPathways for EIF3J-DT Gene

No Data Available

Interacting Proteins for EIF3J-DT Gene

Gene Ontology (GO) - Biological Process for EIF3J-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EIF3J-DT Gene

Drugs & Compounds for EIF3J-DT Gene

No Compound Related Data Available

Transcripts for EIF3J-DT Gene

mRNA/cDNA for EIF3J-DT Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for EIF3J-DT Gene

No ASD Table

Relevant External Links for EIF3J-DT Gene

GeneLoc Exon Structure for
EIF3J-DT
ECgene alternative splicing isoforms for
EIF3J-DT

Expression for EIF3J-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EIF3J-DT Gene

Orthologs for EIF3J-DT Gene

Evolution for EIF3J-DT Gene

ENSEMBL:
Gene Tree for EIF3J-DT (if available)
TreeFam:
Gene Tree for EIF3J-DT (if available)

No data available for Orthologs for EIF3J-DT Gene

Paralogs for EIF3J-DT Gene

No data available for Paralogs for EIF3J-DT Gene

Variants for EIF3J-DT Gene

Sequence variations from dbSNP and Humsavar for EIF3J-DT Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000007535 -- 44,535,298(-) A/C non_coding_transcript_variant
rs1001007602 -- 44,534,886(-) A/T non_coding_transcript_variant
rs1002127345 -- 44,537,133(-) A/C upstream_transcript_variant
rs1002624437 -- 44,538,488(-) C/G upstream_transcript_variant
rs1002676557 -- 44,538,143(-) T/G upstream_transcript_variant

Additional Variant Information for EIF3J-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EIF3J-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EIF3J-DT Gene

Disorders for EIF3J-DT Gene

Additional Disease Information for EIF3J-DT

No disorders were found for EIF3J-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EIF3J-DT Gene

Publications for EIF3J-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for EIF3J-DT Gene

Sources for EIF3J-DT Gene

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