Aliases for EGID-105371807 Gene

Data sources for EGID-105371807 Gene:

RNA type for EGID-105371807 Gene

lncRNA

Aliases for EGID-105371807 Gene

External Ids for EGID-105371807 Gene

Previous GeneCards Identifiers for EGID-105371807 Gene

  • GC17U902140
  • GC17P048295
  • GC17P048248
  • GC17P048296

Summaries for EGID-105371807 Gene

GeneCards Summary for EGID-105371807 Gene

EGID-105371807 (Uncharacterized LOC105371807) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EGID-105371807 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EGID-105371807 Gene

Genomics for EGID-105371807 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for EGID-105371807 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EGID-105371807 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for EGID-105371807 Gene

Latest Assembly
chr17:48,215,441-48,309,400
(GRCh38/hg38)
Size:
93,960 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,371,709-46,385,191
(GRCh37/hg19 by Entrez Gene)
Size:
13,483 bases
Orientation:
Plus strand

chr17:46,371,709-46,386,124
(GRCh37/hg19 by Ensembl)
Size:
14,416 bases
Orientation:
Plus strand

Genomic View for EGID-105371807 Gene

Genes around EGID-105371807 on UCSC Golden Path with GeneCards custom track
EGID-105371807 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
EGID-105371807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGID-105371807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGID-105371807 Gene

Proteins for EGID-105371807 Gene

Post-translational modifications for EGID-105371807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGID-105371807 Gene

Domains & Families for EGID-105371807 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EGID-105371807 Gene

Function for EGID-105371807 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGID-105371807 Gene

Localization for EGID-105371807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGID-105371807 Gene

Pathways & Interactions for EGID-105371807 Gene

PathCards logo

SuperPathways for EGID-105371807 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EGID-105371807 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for EGID-105371807 Gene

Drugs & Compounds for EGID-105371807 Gene

No Compound Related Data Available

Transcripts for EGID-105371807 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for EGID-105371807 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002A71C6_9606 lncRNA 904 4

Ensembl: ENST00000581362 (view in UCSC) ,

LncBook: HSALNT0241885,

LNCipedia: lnc-SNX11-2:2,

NONCODE: NONHSAT054394.2,

URS000029AF8C_9606 lncRNA 571 3

Ensembl: ENST00000604191 (view in UCSC) ,

LNCipedia: lnc-SNX11-2:4,

NONCODE: NONHSAT054393.2,

URS000036F5AD_9606 lncRNA 668 2

Ensembl: ENST00000421610 (view in UCSC) ,

LNCipedia: lnc-SNX11-2:3,

URS0000A949C9_9606 lncRNA 513 2

Ensembl: ENST00000621191 (view in UCSC) ,

LNCipedia: lnc-SNX11-2:5,

URS000081212E_9606 lncRNA 728 1

RefSeq: NR_131239,

EGID-105371807 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for EGID-105371807 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for EGID-105371807 Gene

No ASD Table

Relevant External Links for EGID-105371807 Gene

GeneLoc Exon Structure for
EGID-105371807

Expression for EGID-105371807 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for EGID-105371807

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGID-105371807 Gene

Orthologs for EGID-105371807 Gene

Evolution for EGID-105371807 Gene

ENSEMBL:
Gene Tree for EGID-105371807 (if available)
TreeFam:
Gene Tree for EGID-105371807 (if available)

No data available for Orthologs for EGID-105371807 Gene

Paralogs for EGID-105371807 Gene

No data available for Paralogs for EGID-105371807 Gene

Variants for EGID-105371807 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for EGID-105371807 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for EGID-105371807 Gene

Disorders for EGID-105371807 Gene

Additional Disease Information for EGID-105371807

Open Targets Platform
Open Targets Platform

No disorders were found for EGID-105371807 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EGID-105371807 Gene

Publications for EGID-105371807 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3
  3. Mutation analysis of the THRA1 gene in breast cancer: deletion/fusion of the gene to a novel sequence on 17q in the BT474 cell line. (PMID: 7511052) Futreal PA … Wiseman RW (Cancer research 1994) 3

No data available for Mastermind for EGID-105371807 Gene

Products for EGID-105371807 Gene

Sources for EGID-105371807 Gene