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Aliases for EGID-105371807 Gene

Subcategory (RNA class) for EGID-105371807 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for EGID-105371807 Gene

  • Uncharacterized LOC105371807 3 5
  • THRA1/BTR 3 5
  • Thyroid Hormone Receptor Alpha 3

External Ids for EGID-105371807 Gene

Previous GeneCards Identifiers for EGID-105371807 Gene

  • GC17U902140

Summaries for EGID-105371807 Gene

GeneCards Summary for EGID-105371807 Gene

EGID-105371807 (Uncharacterized LOC105371807) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for EGID-105371807 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGID-105371807 Gene

Genomics for EGID-105371807 Gene

GeneHancer (GH) Regulatory Elements for EGID-105371807 Gene

Promoters and enhancers for EGID-105371807 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048293 Enhancer 1.4 UCNEbase Ensembl ENCODE 550.8 +0.6 562 2.8 BATF IRF4 ZBTB40 ZNF335 ZNF766 SCRT2 ATF7 IKZF2 RUNX3 ZNF362 EGID-105371807 SKAP1 MIR1203 HOXB-AS4 HOXB9 CBX1 SNX11 CDK5RAP3 PRR15L ENSG00000266222
GH17I048538 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +278.8 278831 68.8 FEZF1 IRF4 YY1 ZNF213 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN HOXB2 HOXB3 HOXB6 HOXB4 HOXB5 PIR47329 PIR34300 UBE2Z SP2 ENSG00000264701
GH17I048238 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -52.2 -52173 7.2 HDGF PKNOX1 ARNT SIN3A FEZF1 IRF4 ZNF766 ZNF213 FOS KLF13 SNX11 CBX1 COPZ2 CDK5RAP3 ENSG00000230532 RNU6-1152P SKAP1 MIR1203 EGID-105371807 SP2-AS1
GH17I048264 Enhancer 1.1 Ensembl ENCODE 11.4 -28.6 -28594 2.7 ATF1 ZSCAN4 INSM2 KLF17 SIN3A ZBTB40 POLR2B EGR1 ZNF366 SCRT2 SKAP1 COPZ2 CDK5RAP3 EGID-105371807 MIR1203 MIR196A1 RNU6-1152P CBX1 SNX11 HOXB2
GH17I048261 Enhancer 0.7 ENCODE 11.4 -32.9 -32851 0.2 CTCF PKNOX1 ETV1 ZNF2 BCL11B CTBP1 ZSCAN5C ZNF143 ZNF444 RFX1 EGID-105371807 MIR1203 RNU6-1152P MIR196A1 CBX1 SNX11 LSM3P1 SKAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EGID-105371807 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EGID-105371807 Gene

Genomic Locations for EGID-105371807 Gene
chr17:48,294,335-48,309,040
(GRCh38/hg38)
Size:
14,706 bases
Orientation:
Plus strand
chr17:46,371,709-46,386,124
(GRCh37/hg19)

Genomic View for EGID-105371807 Gene

Genes around EGID-105371807 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGID-105371807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGID-105371807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGID-105371807 Gene

Proteins for EGID-105371807 Gene

Post-translational modifications for EGID-105371807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGID-105371807 Gene

Domains & Families for EGID-105371807 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGID-105371807 Gene

Function for EGID-105371807 Gene

Phenotypes From GWAS Catalog for EGID-105371807 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGID-105371807 Gene

Localization for EGID-105371807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGID-105371807 Gene

Pathways & Interactions for EGID-105371807 Gene

SuperPathways for EGID-105371807 Gene

No Data Available

Interacting Proteins for EGID-105371807 Gene

Gene Ontology (GO) - Biological Process for EGID-105371807 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGID-105371807 Gene

Drugs & Compounds for EGID-105371807 Gene

No Compound Related Data Available

Transcripts for EGID-105371807 Gene

mRNA/cDNA for EGID-105371807 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EGID-105371807 Gene

No ASD Table

Relevant External Links for EGID-105371807 Gene

GeneLoc Exon Structure for
EGID-105371807

Expression for EGID-105371807 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGID-105371807 Gene

Orthologs for EGID-105371807 Gene

Evolution for EGID-105371807 Gene

ENSEMBL:
Gene Tree for EGID-105371807 (if available)
TreeFam:
Gene Tree for EGID-105371807 (if available)

No data available for Orthologs for EGID-105371807 Gene

Paralogs for EGID-105371807 Gene

No data available for Paralogs for EGID-105371807 Gene

Variants for EGID-105371807 Gene

Sequence variations from dbSNP and Humsavar for EGID-105371807 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000223686 -- 48,304,335(+) T/A intron_variant
rs1000538302 -- 48,300,218(+) G/A intron_variant
rs1000648235 -- 48,307,917(+) T/C downstream_transcript_variant
rs1001182438 -- 48,294,792(+) T/C intron_variant
rs1001213779 -- 48,295,175(+) G/A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for EGID-105371807 Gene

Disorders for EGID-105371807 Gene

No disorders were found for EGID-105371807 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EGID-105371807 Gene

Publications for EGID-105371807 Gene

  1. Mutation analysis of the THRA1 gene in breast cancer: deletion/fusion of the gene to a novel sequence on 17q in the BT474 cell line. (PMID: 7511052) Futreal PA … Wiseman RW (Cancer research 1994) 3 58

Products for EGID-105371807 Gene

Sources for EGID-105371807 Gene

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