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Aliases for EGFLAM-AS4 Gene

Subcategory (RNA class) for EGFLAM-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EGFLAM-AS4 Gene

  • EGFLAM Antisense RNA 4 2 3 5
  • EGFLAM Antisense RNA 4 (Non-Protein Coding) 2 3
  • CTD-2022B6.1 3

External Ids for EGFLAM-AS4 Gene

Previous GeneCards Identifiers for EGFLAM-AS4 Gene

  • GC00U933881

Summaries for EGFLAM-AS4 Gene

GeneCards Summary for EGFLAM-AS4 Gene

EGFLAM-AS4 (EGFLAM Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EGFLAM-AS4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGFLAM-AS4 Gene

Genomics for EGFLAM-AS4 Gene

GeneHancer (GH) Regulatory Elements for EGFLAM-AS4 Gene

Promoters and enhancers for EGFLAM-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J038258 Promoter/Enhancer 1.3 EPDnew ENCODE 0.3 +32.4 32412 0.2 KLF17 SIN3A GLI4 ZNF2 YY1 ZNF335 GLIS2 EGR1 KLF7 ZNF548 EGFLAM WDR70 RICTOR EGFLAM-AS4
GH05J038316 Enhancer 0.6 ENCODE 0.3 -26.2 -26179 1.7 GTF2F1 USF2 MIER2 REST ZNF518A SREBF1 MITF RAD51 POLR2A GABPB1 EGFLAM-AS3 EGFLAM-AS4 EGFLAM
GH05J038324 Enhancer 0.2 FANTOM5 0.3 -33.1 -33061 0 EGFLAM-AS3 EGFLAM-AS4 EGFLAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EGFLAM-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EGFLAM-AS4 Gene

Genomic Locations for EGFLAM-AS4 Gene
chr5:38,282,264-38,290,986
(GRCh38/hg38)
Size:
8,723 bases
Orientation:
Minus strand
chr5:38,282,366-38,291,088
(GRCh37/hg19)

Genomic View for EGFLAM-AS4 Gene

Genes around EGFLAM-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGFLAM-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGFLAM-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGFLAM-AS4 Gene

Proteins for EGFLAM-AS4 Gene

Post-translational modifications for EGFLAM-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGFLAM-AS4 Gene

Domains & Families for EGFLAM-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGFLAM-AS4 Gene

Function for EGFLAM-AS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFLAM-AS4 Gene

Localization for EGFLAM-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGFLAM-AS4 Gene

Pathways & Interactions for EGFLAM-AS4 Gene

SuperPathways for EGFLAM-AS4 Gene

No Data Available

Interacting Proteins for EGFLAM-AS4 Gene

Gene Ontology (GO) - Biological Process for EGFLAM-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGFLAM-AS4 Gene

Drugs & Compounds for EGFLAM-AS4 Gene

No Compound Related Data Available

Transcripts for EGFLAM-AS4 Gene

mRNA/cDNA for EGFLAM-AS4 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for EGFLAM-AS4 Gene

EGFLAM antisense RNA 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGFLAM-AS4 Gene

No ASD Table

Relevant External Links for EGFLAM-AS4 Gene

GeneLoc Exon Structure for
EGFLAM-AS4
ECgene alternative splicing isoforms for
EGFLAM-AS4

Expression for EGFLAM-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EGFLAM-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for EGFLAM-AS4 Gene

This gene is overexpressed in Testis (x18.0) and Muscle - Skeletal (x8.0).

SOURCE GeneReport for Unigene cluster for EGFLAM-AS4 Gene:

Hs.570954
genes like me logo Genes that share expression patterns with EGFLAM-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGFLAM-AS4 Gene

Orthologs for EGFLAM-AS4 Gene

Evolution for EGFLAM-AS4 Gene

ENSEMBL:
Gene Tree for EGFLAM-AS4 (if available)
TreeFam:
Gene Tree for EGFLAM-AS4 (if available)

No data available for Orthologs for EGFLAM-AS4 Gene

Paralogs for EGFLAM-AS4 Gene

No data available for Paralogs for EGFLAM-AS4 Gene

Variants for EGFLAM-AS4 Gene

Sequence variations from dbSNP and Humsavar for EGFLAM-AS4 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000167522 -- 38,289,604(-) T/G intron_variant
rs1000347774 -- 38,283,372(-) A/G intron_variant
rs1000441723 -- 38,282,865(-) G/T intron_variant
rs1000776588 -- 38,284,194(-) C/A intron_variant
rs1000865392 -- 38,283,616(-) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EGFLAM-AS4 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372
esv3604766 CNV gain 21293372

Additional Variant Information for EGFLAM-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EGFLAM-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EGFLAM-AS4 Gene

Disorders for EGFLAM-AS4 Gene

Additional Disease Information for EGFLAM-AS4

No disorders were found for EGFLAM-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EGFLAM-AS4 Gene

Publications for EGFLAM-AS4 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for EGFLAM-AS4 Gene

Sources for EGFLAM-AS4 Gene

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