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Aliases for EGFLAM-AS2 Gene

Subcategory (RNA class) for EGFLAM-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EGFLAM-AS2 Gene

  • EGFLAM Antisense RNA 2 2 3 5
  • EGFLAM Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2108O9.2 3

External Ids for EGFLAM-AS2 Gene

Summaries for EGFLAM-AS2 Gene

GeneCards Summary for EGFLAM-AS2 Gene

EGFLAM-AS2 (EGFLAM Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EGFLAM-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGFLAM-AS2 Gene

Genomics for EGFLAM-AS2 Gene

GeneHancer (GH) Regulatory Elements for EGFLAM-AS2 Gene

Promoters and enhancers for EGFLAM-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I038403 Promoter 0.7 EPDnew 550.8 -0.1 -51 0.1 JUND MYC EGFLAM-AS2 EGFLAM EGFLAM-AS1
GH05I038554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.2 -153.0 -152951 3.2 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF213 ZNF263 SP3 LIFR LIFR-AS1 MIR3650 LOC105374732 EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2 EGFLAM
GH05I038462 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -63.2 -63211 8.3 ATF1 FOXA2 SIN3A FEZF1 BRCA1 ETS1 ATF7 FOS DEK RXRA LOC105374732 EGFLAM EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2
GH05I038806 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.1 -405.2 -405190 4.6 PKNOX1 FEZF1 ZNF2 CBX5 ZNF213 ZNF302 E2F8 ZNF143 ZNF548 FOS LIFR-AS1 RICTOR ENSG00000248234 EGFLAM-AS1 EGFLAM-AS2 EGFLAM LINC02110 LOC105374733 ENSG00000250629 LINC01265
GH05I038432 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.1 -30.8 -30819 3 JUN NR2F2 EGFLAM-AS2 EGFLAM LOC105374732 ENSG00000248234
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EGFLAM-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EGFLAM-AS2 Gene

Genomic Locations for EGFLAM-AS2 Gene
chr5:38,399,814-38,403,471
(GRCh38/hg38)
Size:
3,658 bases
Orientation:
Minus strand
chr5:38,399,916-38,403,573
(GRCh37/hg19)

Genomic View for EGFLAM-AS2 Gene

Genes around EGFLAM-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGFLAM-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGFLAM-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGFLAM-AS2 Gene

Proteins for EGFLAM-AS2 Gene

Post-translational modifications for EGFLAM-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGFLAM-AS2 Gene

Domains & Families for EGFLAM-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGFLAM-AS2 Gene

Function for EGFLAM-AS2 Gene

Phenotypes From GWAS Catalog for EGFLAM-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFLAM-AS2 Gene

Localization for EGFLAM-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGFLAM-AS2 Gene

Pathways & Interactions for EGFLAM-AS2 Gene

SuperPathways for EGFLAM-AS2 Gene

No Data Available

Interacting Proteins for EGFLAM-AS2 Gene

Gene Ontology (GO) - Biological Process for EGFLAM-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGFLAM-AS2 Gene

Drugs & Compounds for EGFLAM-AS2 Gene

No Compound Related Data Available

Transcripts for EGFLAM-AS2 Gene

mRNA/cDNA for EGFLAM-AS2 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EGFLAM-AS2 Gene

EGFLAM antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGFLAM-AS2 Gene

No ASD Table

Relevant External Links for EGFLAM-AS2 Gene

GeneLoc Exon Structure for
EGFLAM-AS2
ECgene alternative splicing isoforms for
EGFLAM-AS2

Expression for EGFLAM-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EGFLAM-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for EGFLAM-AS2 Gene

This gene is overexpressed in Testis (x52.7).

SOURCE GeneReport for Unigene cluster for EGFLAM-AS2 Gene:

Hs.662304
genes like me logo Genes that share expression patterns with EGFLAM-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGFLAM-AS2 Gene

Orthologs for EGFLAM-AS2 Gene

Evolution for EGFLAM-AS2 Gene

ENSEMBL:
Gene Tree for EGFLAM-AS2 (if available)
TreeFam:
Gene Tree for EGFLAM-AS2 (if available)

No data available for Orthologs for EGFLAM-AS2 Gene

Paralogs for EGFLAM-AS2 Gene

No data available for Paralogs for EGFLAM-AS2 Gene

Variants for EGFLAM-AS2 Gene

Sequence variations from dbSNP and Humsavar for EGFLAM-AS2 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000137512 -- 38,399,432(-) T/C downstream_transcript_variant
rs1000267842 -- 38,399,952(-) C/T downstream_transcript_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000596415 -- 38,400,472(-) C/T intron_variant, non_coding_transcript_variant
rs1000863709 -- 38,401,384(-) T/C intron_variant, non_coding_transcript_variant
rs1001315503 -- 38,401,572(-) T/A/C intron_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for EGFLAM-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372
esv3604766 CNV gain 21293372
esv3604768 CNV gain 21293372

Additional Variant Information for EGFLAM-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EGFLAM-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EGFLAM-AS2 Gene

Disorders for EGFLAM-AS2 Gene

Additional Disease Information for EGFLAM-AS2

No disorders were found for EGFLAM-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EGFLAM-AS2 Gene

Publications for EGFLAM-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for EGFLAM-AS2 Gene

Sources for EGFLAM-AS2 Gene

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