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Aliases for EGFLAM-AS1 Gene

Subcategory (RNA class) for EGFLAM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for EGFLAM-AS1 Gene

  • EGFLAM Antisense RNA 1 2 3 5
  • EGFLAM Antisense RNA 1 (Non-Protein Coding) 2 3
  • LncRNA Low Expressed In Gastric Cancer 2 3
  • LncRNA-LOWEG 3

External Ids for EGFLAM-AS1 Gene

Previous GeneCards Identifiers for EGFLAM-AS1 Gene

  • GC00U933924

Summaries for EGFLAM-AS1 Gene

GeneCards Summary for EGFLAM-AS1 Gene

EGFLAM-AS1 (EGFLAM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with EGFLAM-AS1 include Gastric Cancer.

Additional gene information for EGFLAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGFLAM-AS1 Gene

Genomics for EGFLAM-AS1 Gene

GeneHancer (GH) Regulatory Elements for EGFLAM-AS1 Gene

Promoters and enhancers for EGFLAM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J038554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 -129.0 -129046 3.2 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF213 ZNF263 SP3 LIFR LIFR-AS1 MIR3650 LOC105374732 EGFLAM-AS1 ENSG00000248234 RICTOR EGFLAM-AS2 EGFLAM
GH05J038462 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -39.3 -39306 8.3 ATF1 FOXA2 SIN3A FEZF1 BRCA1 ETS1 ATF7 FOS DEK RXRA LOC105374732 EGFLAM EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2
GH05J038806 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.3 -381.3 -381285 4.6 PKNOX1 FEZF1 ZNF2 CBX5 ZNF213 E2F8 ZNF143 ZNF548 FOS DEK RICTOR ENSG00000248234 EGFLAM-AS1 EGFLAM-AS2 EGFLAM LINC02110 LOC105374733 ENSG00000250629 OSMR-AS1 LINC01265
GH05J038659 Enhancer 1.2 FANTOM5 ENCODE 10.6 -233.0 -232965 1.3 HDAC1 ATF1 NFRKB MZF1 GLI4 ZBTB40 YY1 ZNF335 POLR2B ZNF766 EGFLAM-AS1 ENSG00000248234 LIFR ENSG00000251189 LIFR-AS1
GH05J038453 Enhancer 0.8 ENCODE 11.2 -26.3 -26338 0.2 BACH1 STAT5A EBF1 IRF4 RELA POLR2A NFATC1 EED ATF7 ETV6 ENSG00000248234 EGFLAM-AS1 LOC105374732 EGFLAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EGFLAM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EGFLAM-AS1 Gene

Genomic Locations for EGFLAM-AS1 Gene
chr5:38,425,036-38,427,376
(GRCh38/hg38)
Size:
2,341 bases
Orientation:
Minus strand
chr5:38,425,138-38,427,478
(GRCh37/hg19)
Size:
2,341 bases
Orientation:
Minus strand

Genomic View for EGFLAM-AS1 Gene

Genes around EGFLAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGFLAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGFLAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for EGFLAM-AS1 Gene

Proteins for EGFLAM-AS1 Gene

Post-translational modifications for EGFLAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGFLAM-AS1 Gene

Domains & Families for EGFLAM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGFLAM-AS1 Gene

Function for EGFLAM-AS1 Gene

Phenotypes From GWAS Catalog for EGFLAM-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFLAM-AS1 Gene

Localization for EGFLAM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGFLAM-AS1 Gene

Pathways & Interactions for EGFLAM-AS1 Gene

SuperPathways for EGFLAM-AS1 Gene

No Data Available

Interacting Proteins for EGFLAM-AS1 Gene

Gene Ontology (GO) - Biological Process for EGFLAM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGFLAM-AS1 Gene

Drugs & Compounds for EGFLAM-AS1 Gene

No Compound Related Data Available

Transcripts for EGFLAM-AS1 Gene

mRNA/cDNA for EGFLAM-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGFLAM-AS1 Gene

No ASD Table

Relevant External Links for EGFLAM-AS1 Gene

GeneLoc Exon Structure for
EGFLAM-AS1
ECgene alternative splicing isoforms for
EGFLAM-AS1

Expression for EGFLAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EGFLAM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EGFLAM-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x7.3), Ovary (x5.3), and Muscle - Skeletal (x4.6).
genes like me logo Genes that share expression patterns with EGFLAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGFLAM-AS1 Gene

Orthologs for EGFLAM-AS1 Gene

Evolution for EGFLAM-AS1 Gene

ENSEMBL:
Gene Tree for EGFLAM-AS1 (if available)
TreeFam:
Gene Tree for EGFLAM-AS1 (if available)

No data available for Orthologs for EGFLAM-AS1 Gene

Paralogs for EGFLAM-AS1 Gene

No data available for Paralogs for EGFLAM-AS1 Gene

Variants for EGFLAM-AS1 Gene

Additional Variant Information for EGFLAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EGFLAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EGFLAM-AS1 Gene

Disorders for EGFLAM-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for EGFLAM-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with EGFLAM-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for EGFLAM-AS1 Gene

Publications for EGFLAM-AS1 Gene

  1. A novel long noncoding RNA-LOWEG is low expressed in gastric cancer and acts as a tumor suppressor by inhibiting cell invasion. (PMID: 26537802) Zhao JH … Wang ZN (Journal of cancer research and clinical oncology 2016) 2 3 58
  2. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3 58
  3. Long non-coding RNA-CTD-2108O9.1 represses breast cancer metastasis by influencing leukemia inhibitory factor receptor. (PMID: 29603493) Wang M … Xu Y (Cancer science 2018) 3

Products for EGFLAM-AS1 Gene

Sources for EGFLAM-AS1 Gene

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