Aliases for EGFLAM-AS1 Gene

Subcategory (RNA class) for EGFLAM-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for EGFLAM-AS1 Gene

  • EGFLAM Antisense RNA 1 2 3 5
  • EGFLAM-AS1 2 5 165
  • EGFLAM Antisense RNA 1 (Non-Protein Coding) 2 3
  • LncRNA Low Expressed In Gastric Cancer 2 3
  • CTD-2108O9.1 2 3
  • LncRNA-LOWEG 2 3
  • NONHSAG040223.2 91
  • HSALNG0041277 164

External Ids for EGFLAM-AS1 Gene

Previous GeneCards Identifiers for EGFLAM-AS1 Gene

  • GC00U933924

Summaries for EGFLAM-AS1 Gene

GeneCards Summary for EGFLAM-AS1 Gene

EGFLAM-AS1 (EGFLAM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with EGFLAM-AS1 include Gastric Cancer.

Additional gene information for EGFLAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EGFLAM-AS1 Gene

Genomics for EGFLAM-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for EGFLAM-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EGFLAM-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for EGFLAM-AS1 Gene

Genomic Locations for EGFLAM-AS1 Gene
chr5:38,424,712-38,427,575
(GRCh38/hg38)
Size:
2,864 bases
Orientation:
Minus strand
chr5:38,425,138-38,427,478
(GRCh37/hg19)
Size:
2,341 bases
Orientation:
Minus strand

Genomic View for EGFLAM-AS1 Gene

Genes around EGFLAM-AS1 on UCSC Golden Path with GeneCards custom track
EGFLAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
EGFLAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGFLAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for EGFLAM-AS1 Gene

Proteins for EGFLAM-AS1 Gene

Post-translational modifications for EGFLAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGFLAM-AS1 Gene

Domains & Families for EGFLAM-AS1 Gene

Gene Families for EGFLAM-AS1 Gene

genes like me logo Genes that share domains with EGFLAM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EGFLAM-AS1 Gene

Function for EGFLAM-AS1 Gene

Phenotypes From GWAS Catalog for EGFLAM-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGFLAM-AS1 Gene

Localization for EGFLAM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EGFLAM-AS1 Gene

Pathways & Interactions for EGFLAM-AS1 Gene

PathCards logo

SuperPathways for EGFLAM-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EGFLAM-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for EGFLAM-AS1 Gene

Drugs & Compounds for EGFLAM-AS1 Gene

No Compound Related Data Available

Transcripts for EGFLAM-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for EGFLAM-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001B88C0_9606 lncRNA 331 4

HGNC: 41169,

Ensembl: ENST00000508986 (view in UCSC) ,

LNCipedia: EGFLAM-AS1:1,

NONCODE: NONHSAT101090.2,

URS00009BFE96_9606 lncRNA 331 2

LncBook: HSALNT0086788,

NONCODE: NONHSAT204079.1,

URS0000E93089_9606 lncRNA 854 1

LncBook: HSALNT0086786,

EGFLAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for EGFLAM-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGFLAM-AS1 Gene

No ASD Table

Relevant External Links for EGFLAM-AS1 Gene

GeneLoc Exon Structure for
EGFLAM-AS1

Expression for EGFLAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for EGFLAM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EGFLAM-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x7.3), Ovary (x5.3), and Muscle - Skeletal (x4.6).
genes like me logo Genes that share expression patterns with EGFLAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EGFLAM-AS1 Gene

Orthologs for EGFLAM-AS1 Gene

Evolution for EGFLAM-AS1 Gene

ENSEMBL:
Gene Tree for EGFLAM-AS1 (if available)
TreeFam:
Gene Tree for EGFLAM-AS1 (if available)

No data available for Orthologs for EGFLAM-AS1 Gene

Paralogs for EGFLAM-AS1 Gene

No data available for Paralogs for EGFLAM-AS1 Gene

Variants for EGFLAM-AS1 Gene

Additional Variant Information for EGFLAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EGFLAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EGFLAM-AS1 Gene

Disorders for EGFLAM-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for EGFLAM-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for EGFLAM-AS1

genes like me logo Genes that share disorders with EGFLAM-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EGFLAM-AS1 Gene

Publications for EGFLAM-AS1 Gene

  1. Long non-coding RNA-CTD-2108O9.1 represses breast cancer metastasis by influencing leukemia inhibitory factor receptor. (PMID: 29603493) Wang M … Xu Y (Cancer science 2018) 2 3
  2. A novel long noncoding RNA-LOWEG is low expressed in gastric cancer and acts as a tumor suppressor by inhibiting cell invasion. (PMID: 26537802) Zhao JH … Wang ZN (Journal of cancer research and clinical oncology 2016) 2 3
  3. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3

Products for EGFLAM-AS1 Gene

Sources for EGFLAM-AS1 Gene