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Aliases for EFCAB14-AS1 Gene

Subcategory (RNA class) for EFCAB14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EFCAB14-AS1 Gene

  • EFCAB14 Antisense RNA 1 2 3 5
  • KIAA0494 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA0494 Antisense RNA 1 2
  • KIAA0494-AS1 3

External Ids for EFCAB14-AS1 Gene

Previous HGNC Symbols for EFCAB14-AS1 Gene

  • KIAA0494-AS1

Previous GeneCards Identifiers for EFCAB14-AS1 Gene

  • GC01P047141

Summaries for EFCAB14-AS1 Gene

GeneCards Summary for EFCAB14-AS1 Gene

EFCAB14-AS1 (EFCAB14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EFCAB14-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCAB14-AS1 Gene

Genomics for EFCAB14-AS1 Gene

GeneHancer (GH) Regulatory Elements for EFCAB14-AS1 Gene

Promoters and enhancers for EFCAB14-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I046246 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 43 -426.0 -426026 3.1 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 GC01M046246 RAD54L TOE1 LRRC41 GPBP1L1 EFCAB14-AS1 NSUN4 RPL7AP16 NASP MOB3C
GH01I046129 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 41.4 -541.1 -541083 6.3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PIK3R3 LOC101929626 TOE1 GPBP1L1 LRRC41 RPL7AP16 EFCAB14-AS1 RPS15AP10 MOB3C TMEM69
GH01I047312 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 34.7 +640.0 640003 3.1 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 STIL EFCAB14-AS1 NSUN4 MOB3C CMPK1 ENSG00000272491 LINC01389 FOXE3 GC01M047303
GH01I045684 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 32.3 -987.1 -987066 5.1 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 GPBP1L1 TMEM69 LRRC41 TOE1 RPS8 RPL7AP16 EFCAB14-AS1 HECTD3 MAST2 RPS15AP10
GH01I046717 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 31.4 +44.7 44749 3.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 EFCAB14 PIR52630 LRRC41 EFCAB14-AS1 NSUN4 TEX38 LINC01389 CYP4B1 MOB3C NENFP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EFCAB14-AS1 Gene

Genomic Locations for EFCAB14-AS1 Gene
chr1:46,674,036-46,692,098
(GRCh38/hg38)
Size:
18,063 bases
Orientation:
Plus strand
chr1:47,139,708-47,157,770
(GRCh37/hg19)

Genomic View for EFCAB14-AS1 Gene

Genes around EFCAB14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB14-AS1 Gene

Proteins for EFCAB14-AS1 Gene

Post-translational modifications for EFCAB14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EFCAB14-AS1 Gene

Domains & Families for EFCAB14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EFCAB14-AS1 Gene

Function for EFCAB14-AS1 Gene

Phenotypes From GWAS Catalog for EFCAB14-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EFCAB14-AS1 Gene

Localization for EFCAB14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EFCAB14-AS1 Gene

Pathways & Interactions for EFCAB14-AS1 Gene

SuperPathways for EFCAB14-AS1 Gene

No Data Available

Interacting Proteins for EFCAB14-AS1 Gene

Gene Ontology (GO) - Biological Process for EFCAB14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EFCAB14-AS1 Gene

Drugs & Compounds for EFCAB14-AS1 Gene

No Compound Related Data Available

Transcripts for EFCAB14-AS1 Gene

mRNA/cDNA for EFCAB14-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EFCAB14-AS1 Gene

EFCAB14 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB14-AS1 Gene

No ASD Table

Relevant External Links for EFCAB14-AS1 Gene

GeneLoc Exon Structure for
EFCAB14-AS1
ECgene alternative splicing isoforms for
EFCAB14-AS1

Expression for EFCAB14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EFCAB14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EFCAB14-AS1 Gene

This gene is overexpressed in Testis (x13.7).

SOURCE GeneReport for Unigene cluster for EFCAB14-AS1 Gene:

Hs.568643
genes like me logo Genes that share expression patterns with EFCAB14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EFCAB14-AS1 Gene

Orthologs for EFCAB14-AS1 Gene

Evolution for EFCAB14-AS1 Gene

ENSEMBL:
Gene Tree for EFCAB14-AS1 (if available)
TreeFam:
Gene Tree for EFCAB14-AS1 (if available)

No data available for Orthologs for EFCAB14-AS1 Gene

Paralogs for EFCAB14-AS1 Gene

No data available for Paralogs for EFCAB14-AS1 Gene

Variants for EFCAB14-AS1 Gene

Sequence variations from dbSNP and Humsavar for EFCAB14-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000167873 -- 46,673,425(+) T/G upstream_transcript_variant
rs1000267119 -- 46,676,706(+) G/C intron_variant
rs1000274259 -- 46,674,062(+) A/T non_coding_transcript_variant
rs1000425209 -- 46,683,841(+) A/G intron_variant
rs1000501931 -- 46,679,427(+) C/T intron_variant

Additional Variant Information for EFCAB14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EFCAB14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EFCAB14-AS1 Gene

Disorders for EFCAB14-AS1 Gene

Additional Disease Information for EFCAB14-AS1

No disorders were found for EFCAB14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB14-AS1 Gene

Publications for EFCAB14-AS1 Gene

  1. Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy. (PMID: 22095909) Lange CM … Swiss Hepatitis C Cohort Study Group (Hepatology (Baltimore, Md.) 2012) 3 58

Products for EFCAB14-AS1 Gene

Sources for EFCAB14-AS1 Gene

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