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Aliases for EFCAB13 Gene

Aliases for EFCAB13 Gene

  • EF-Hand Calcium Binding Domain 13 2 3 5
  • C17orf57 3 4
  • EF-Hand Calcium-Binding Domain-Containing Protein 13 3
  • EF-Hand Domain-Containing Protein C17orf57 3
  • Chromosome 17 Open Reading Frame 57 2

External Ids for EFCAB13 Gene

Previous HGNC Symbols for EFCAB13 Gene

  • C17orf57

Previous GeneCards Identifiers for EFCAB13 Gene

  • GC17P045404

Summaries for EFCAB13 Gene

GeneCards Summary for EFCAB13 Gene

EFCAB13 (EF-Hand Calcium Binding Domain 13) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include calcium ion binding.

Additional gene information for EFCAB13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EFCAB13 Gene

Genomics for EFCAB13 Gene

GeneHancer (GH) Regulatory Elements for EFCAB13 Gene

Promoters and enhancers for EFCAB13 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J047323 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 672.2 +1.0 975 2.3 HDGF PKNOX1 SMAD1 ARNT MLX ZFP64 SIN3A DMAP1 YBX1 ZBTB7B EFCAB13 THCAT158 MRPL45P2 ARL17B ARL17A RPS7P11 TBKBP1 ENSG00000264701 RNU7-186P SP2
GH17J047941 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 81.7 +618.6 618567 2 CLOCK MLX DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 SP3 SP2-AS1 PNPO SP6 MRPL45P2 SP2 UBE2Z EFCAB13 ENSG00000264701 ENSG00000266601 CDK5RAP3
GH17J047647 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 37.2 +326.8 326795 4.8 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 KPNB1 ENSG00000263766 SP2 ENSG00000266601 MRPL45P2 EFCAB13 ENSG00000264701 ENSG00000253347 TBKBP1 RPS2P47
GH17J047894 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 38.6 +573.0 572968 4 ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SP2 LOC102724532 ENSG00000266601 EFCAB13 KPNB1 CALCOCO2 MRPL45P2 ENSG00000264701 ENSG00000264243 RN7SL125P
GH17J048044 Promoter/Enhancer 2.5 VISTA EPDnew Ensembl ENCODE dbSUPER 29.6 +727.8 727817 13 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC COPZ2 NFE2L1 ENSG00000266601 SP2 SNX11 KPNB1 MRPL45P2 EFCAB13 CBX1 UBE2Z
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EFCAB13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EFCAB13 Gene

Genomic Locations for EFCAB13 Gene
118,023 bases
Plus strand
118,023 bases
Plus strand

Genomic View for EFCAB13 Gene

Genes around EFCAB13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB13 Gene

Proteins for EFCAB13 Gene

  • Protein details for EFCAB13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    EF-hand calcium-binding domain-containing protein 13
    Protein Accession:
    Secondary Accessions:
    • G3V128
    • Q49AG9

    Protein attributes for EFCAB13 Gene

    973 amino acids
    Molecular mass:
    110129 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH37876.1; Type=Frameshift; Positions=342; Evidence={ECO:0000305};

    Alternative splice isoforms for EFCAB13 Gene


neXtProt entry for EFCAB13 Gene

Post-translational modifications for EFCAB13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for EFCAB13 Gene

No data available for DME Specific Peptides for EFCAB13 Gene

Domains & Families for EFCAB13 Gene

Gene Families for EFCAB13 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for EFCAB13 Gene


Suggested Antigen Peptide Sequences for EFCAB13 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EFCAB13: view

No data available for UniProtKB/Swiss-Prot for EFCAB13 Gene

Function for EFCAB13 Gene

Phenotypes From GWAS Catalog for EFCAB13 Gene

genes like me logo Genes that share phenotypes with EFCAB13: view

Animal Model Products

CRISPR Products

miRNA for EFCAB13 Gene

miRTarBase miRNAs that target EFCAB13

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for EFCAB13

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for EFCAB13 Gene

Localization for EFCAB13 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EFCAB13 gene
Compartment Confidence
nucleus 3
cytosol 3
golgi apparatus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Nucleus (3)
  • Nuclear speckles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for EFCAB13 Gene

Pathways & Interactions for EFCAB13 Gene

SuperPathways for EFCAB13 Gene

No Data Available

Interacting Proteins for EFCAB13 Gene

Gene Ontology (GO) - Biological Process for EFCAB13 Gene


No data available for Pathways by source and SIGNOR curated interactions for EFCAB13 Gene

Drugs & Compounds for EFCAB13 Gene

No Compound Related Data Available

Transcripts for EFCAB13 Gene

mRNA/cDNA for EFCAB13 Gene

Unigene Clusters for EFCAB13 Gene

EF-hand calcium binding domain 13:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for EFCAB13

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB13 Gene

No ASD Table

Relevant External Links for EFCAB13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for EFCAB13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EFCAB13 Gene

mRNA differential expression in normal tissues according to GTEx for EFCAB13 Gene

This gene is overexpressed in Testis (x4.5) and Thyroid (x4.2).

Protein differential expression in normal tissues from HIPED for EFCAB13 Gene

This gene is overexpressed in Gallbladder (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for EFCAB13 Gene

Protein tissue co-expression partners for EFCAB13 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of EFCAB13 Gene:


SOURCE GeneReport for Unigene cluster for EFCAB13 Gene:

genes like me logo Genes that share expression patterns with EFCAB13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EFCAB13 Gene

Orthologs for EFCAB13 Gene

This gene was present in the common ancestor of chordates.

Orthologs for EFCAB13 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia EFCAB13 34 33
  • 99.11 (n)
(Canis familiaris)
Mammalia EFCAB13 34 33
  • 82.61 (n)
(Bos Taurus)
Mammalia EFCAB13 34
  • 65 (a)
(Mus musculus)
Mammalia Gm11639 34
  • 39 (a)
(Ornithorhynchus anatinus)
Mammalia EFCAB13 34
  • 31 (a)
(Anolis carolinensis)
Reptilia EFCAB13 34
  • 20 (a)
Species where no ortholog for EFCAB13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EFCAB13 Gene

Gene Tree for EFCAB13 (if available)
Gene Tree for EFCAB13 (if available)
Evolutionary constrained regions (ECRs) for EFCAB13: view image

Paralogs for EFCAB13 Gene

(1) SIMAP similar genes for EFCAB13 Gene using alignment to 5 proteins:

  • E5RI18_HUMAN
genes like me logo Genes that share paralogs with EFCAB13: view

No data available for Paralogs for EFCAB13 Gene

Variants for EFCAB13 Gene

Sequence variations from dbSNP and Humsavar for EFCAB13 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
VAR_035465 A breast cancer sample p.Gln286His
rs1000047742 -- 47,414,186(+) C/G intron_variant
rs1000111537 -- 47,392,673(+) G/C intron_variant
rs1000142051 -- 47,382,044(+) T/G intron_variant
rs1000145254 -- 47,355,484(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EFCAB13 Gene

Variant ID Type Subtype PubMed ID
nsv960118 CNV duplication 23825009
nsv953918 CNV duplication 24416366
nsv833468 CNV gain 17160897
nsv575462 CNV loss 21841781
nsv525267 CNV gain 19592680
nsv516872 CNV gain+loss 19592680
nsv477890 CNV novel sequence insertion 20440878
nsv472844 CNV novel sequence insertion 20440878
nsv471701 CNV gain 15918152
nsv470590 CNV loss 18288195
nsv469573 CNV gain 16826518
nsv457821 CNV loss 19166990
nsv1146669 OTHER inversion 26484159
esv3893025 CNV loss 25118596
esv3640701 CNV loss 21293372
esv3582794 CNV loss 25503493
esv3582792 CNV loss 25503493
esv2762621 CNV loss 21179565
esv1424224 CNV insertion 17803354
dgv578e214 CNV loss 21293372
dgv3261n100 CNV loss 25217958

Variation tolerance for EFCAB13 Gene

Residual Variation Intolerance Score: 98% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.18; 87.93% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for EFCAB13 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EFCAB13 Gene

Disorders for EFCAB13 Gene

Additional Disease Information for EFCAB13

No disorders were found for EFCAB13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB13 Gene

Publications for EFCAB13 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3 58
  3. Biological, clinical and population relevance of 95 loci for blood lipids. (PMID: 20686565) Teslovich TM … Kathiresan S (Nature 2010) 3 58
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L … Andersson-Svahn H (Molecular & cellular proteomics : MCP 2008) 3 58
  5. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4 58

Products for EFCAB13 Gene

Sources for EFCAB13 Gene

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