Aliases for EFCAB11 Gene

Aliases for EFCAB11 Gene

  • EF-Hand Calcium Binding Domain 11 2 3 5
  • EF-Hand Calcium-Binding Domain-Containing Protein 11 3 4
  • C14orf143 3 4
  • EF-Hand Domain-Containing Protein C14orf143 3
  • Chromosome 14 Open Reading Frame 143 2

External Ids for EFCAB11 Gene

Previous HGNC Symbols for EFCAB11 Gene

  • C14orf143

Previous GeneCards Identifiers for EFCAB11 Gene

  • GC14M090262
  • GC14M090340
  • GC14M090056
  • GC14M090067
  • GC14M092336
  • GC14M092431
  • GC14M092454
  • GC14M090205
  • GC14M090500
  • GC14M090834
  • GC14M091105
  • GC14M091403
  • GC14M091690
  • GC14M091980
  • GC14M092236

Summaries for EFCAB11 Gene

GeneCards Summary for EFCAB11 Gene

EFCAB11 (EF-Hand Calcium Binding Domain 11) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include calcium ion binding.

Additional gene information for EFCAB11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EFCAB11 Gene

Genomics for EFCAB11 Gene

GeneHancer (GH) Regulatory Elements for EFCAB11 Gene

Promoters and enhancers for EFCAB11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J089953 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -1.1 -1074 4.9 FOXK2 HNRNPK ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 MYC POLR2G TDP1 EFCAB11 ENSG00000259053 lnc-KCNK13-3 NRDE2 ENSG00000213315 KCNK13 RPL21P11
GH14J089909 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 6.2 +42.9 42863 4.6 FOXK2 EP300 ZSCAN5C TCF12 USF1 NCOR1 FOS KDM6A TCF7 FOXA1 NRDE2 RPL21P11 TDP1 EFCAB11 FOXN3 KCNK13 lnc-FOXN3-7 RAB42P1 lnc-FOXN3-8 ENSG00000259053
GH14J090003 Enhancer 0.4 Ensembl 11.1 -49.3 -49324 1.4 EP300 MXI1 RFX1 KCNK13 TDP1 EFCAB11 piR-57412 lnc-KCNK13-3
GH14J089987 Enhancer 0.3 Ensembl 11 -32.7 -32724 0.6 PRDM1 TDP1 EFCAB11 lnc-KCNK13-3 piR-57412
GH14J089638 Enhancer 0.3 Ensembl dbSUPER 6.1 +315.9 315876 0.6 EFCAB11 LOC105370616 lnc-TDP1-8 LOC105370617 ENSG00000259053
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EFCAB11 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for EFCAB11

Genomic Locations for EFCAB11 Gene

Genomic Locations for EFCAB11 Gene
chr14:89,794,669-89,954,777
(GRCh38/hg38)
Size:
160,109 bases
Orientation:
Minus strand
chr14:90,261,013-90,421,121
(GRCh37/hg19)
Size:
160,109 bases
Orientation:
Minus strand

Genomic View for EFCAB11 Gene

Genes around EFCAB11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EFCAB11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EFCAB11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EFCAB11 Gene

Proteins for EFCAB11 Gene

  • Protein details for EFCAB11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUY7-EFC11_HUMAN
    Recommended name:
    EF-hand calcium-binding domain-containing protein 11
    Protein Accession:
    Q9BUY7
    Secondary Accessions:
    • B3KT10
    • B7Z5G9
    • G3V5G1
    • Q86T09
    • Q86TV7
    • Q8NDQ1

    Protein attributes for EFCAB11 Gene

    Size:
    163 amino acids
    Molecular mass:
    19225 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • [Isoform 4]: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
    SequenceCaution:
    • Sequence=CAD62325.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for EFCAB11 Gene

neXtProt entry for EFCAB11 Gene

Post-translational modifications for EFCAB11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for EFCAB11 Gene

Domains & Families for EFCAB11 Gene

Gene Families for EFCAB11 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for EFCAB11 Gene

Suggested Antigen Peptide Sequences for EFCAB11 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ51529 (B7Z5G9_HUMAN)
  • EF-hand calcium-binding domain-containing protein 11 (EFC11_HUMAN)
genes like me logo Genes that share domains with EFCAB11: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EFCAB11 Gene

Function for EFCAB11 Gene

Phenotypes From GWAS Catalog for EFCAB11 Gene

Gene Ontology (GO) - Molecular Function for EFCAB11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IBA 21873635
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with EFCAB11: view
genes like me logo Genes that share phenotypes with EFCAB11: view

Animal Model Products

CRISPR Products

miRNA for EFCAB11 Gene

miRTarBase miRNAs that target EFCAB11

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for EFCAB11 Gene

Localization for EFCAB11 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EFCAB11 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 0
mitochondrion 0

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cell Junctions (2)
  • Cytosol (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for EFCAB11 Gene

Pathways & Interactions for EFCAB11 Gene

PathCards logo

SuperPathways for EFCAB11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EFCAB11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019722 calcium-mediated signaling IBA 21873635
genes like me logo Genes that share ontologies with EFCAB11: view

No data available for Pathways by source and SIGNOR curated interactions for EFCAB11 Gene

Drugs & Compounds for EFCAB11 Gene

No Compound Related Data Available

Transcripts for EFCAB11 Gene

mRNA/cDNA for EFCAB11 Gene

5 REFSEQ mRNAs :
11 NCBI additional mRNA sequence :
13 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EFCAB11 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b
SP1: - - - - - - - - -
SP2: -
SP3: - - - - - - - -
SP4: - - -
SP5:
SP6: - -
SP7:

Relevant External Links for EFCAB11 Gene

GeneLoc Exon Structure for
EFCAB11

Expression for EFCAB11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for EFCAB11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EFCAB11 Gene

This gene is overexpressed in Testis (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for EFCAB11

SOURCE GeneReport for Unigene cluster for EFCAB11 Gene:

Hs.123232

Evidence on tissue expression from TISSUES for EFCAB11 Gene

  • Nervous system(4.3)
  • Eye(4)
genes like me logo Genes that share expression patterns with EFCAB11: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for EFCAB11 Gene

Orthologs for EFCAB11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for EFCAB11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia EFCAB11 31 30
  • 98.98 (n)
OneToOne
cow
(Bos Taurus)
Mammalia EFCAB11 31 30
  • 86.5 (n)
OneToOne
dog
(Canis familiaris)
Mammalia EFCAB11 31 30
  • 85.89 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Efcab11 17 31 30
  • 80.83 (n)
rat
(Rattus norvegicus)
Mammalia Efcab11 30
  • 80.21 (n)
oppossum
(Monodelphis domestica)
Mammalia EFCAB11 31
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EFCAB11 31
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves EFCAB11 31 30
  • 68.32 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EFCAB11 31
  • 55 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia efcab11 30
  • 62.55 (n)
zebrafish
(Danio rerio)
Actinopterygii efcab11 31 30
  • 57.99 (n)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1099 31
  • 43 (a)
OneToOne
Species where no ortholog for EFCAB11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EFCAB11 Gene

ENSEMBL:
Gene Tree for EFCAB11 (if available)
TreeFam:
Gene Tree for EFCAB11 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for EFCAB11: view image

Paralogs for EFCAB11 Gene

(2) SIMAP similar genes for EFCAB11 Gene using alignment to 5 proteins:

  • EFC11_HUMAN
  • B7Z5G9_HUMAN
  • F8WA99_HUMAN
  • G3V5G1_HUMAN
  • H0YJX4_HUMAN
genes like me logo Genes that share paralogs with EFCAB11: view

No data available for Paralogs for EFCAB11 Gene

Variants for EFCAB11 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for EFCAB11 Gene

SNP ID Clinical significance and condition Chr 14 pos Variation AA Info Type
rs34486581 - p.Asp31Gly
rs34911716 - p.Thr45Ala
rs35435801 - p.Ala15Val

Additional dbSNP identifiers (rs#s) for EFCAB11 Gene

Structural Variations from Database of Genomic Variants (DGV) for EFCAB11 Gene

Variant ID Type Subtype PubMed ID
esv2481770 CNV deletion 19546169
esv2661275 CNV deletion 23128226
esv2749003 CNV deletion 23290073
esv3635297 CNV gain 21293372
esv3635302 CNV loss 21293372
esv3635304 CNV loss 21293372
esv7800 CNV gain 19470904
nsv1045864 CNV loss 25217958
nsv507764 OTHER sequence alteration 20534489
nsv517864 CNV loss 19592680
nsv832853 CNV gain 17160897
nsv832854 CNV gain 17160897
nsv976364 CNV duplication 23825009

Variation tolerance for EFCAB11 Gene

Residual Variation Intolerance Score: 79.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.11; 61.22% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for EFCAB11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EFCAB11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EFCAB11 Gene

Disorders for EFCAB11 Gene

Additional Disease Information for EFCAB11

No disorders were found for EFCAB11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EFCAB11 Gene

Publications for EFCAB11 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 54
  3. Replication the association of 2q32.2-q32.3 and 14q32.11 with hepatocellular carcinoma. (PMID: 25665738) Chen W … Sun L (Gene 2015) 3 54
  4. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 54
  5. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 54

Products for EFCAB11 Gene

Sources for EFCAB11 Gene