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Aliases for EDRF1-AS1 Gene

Subcategory (RNA class) for EDRF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EDRF1-AS1 Gene

  • EDRF1 Antisense RNA 1 2 3 5

External Ids for EDRF1-AS1 Gene

Previous GeneCards Identifiers for EDRF1-AS1 Gene

  • GC10M127434

Summaries for EDRF1-AS1 Gene

GeneCards Summary for EDRF1-AS1 Gene

EDRF1-AS1 (EDRF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EDRF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDRF1-AS1 Gene

Genomics for EDRF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for EDRF1-AS1 Gene

Promoters and enhancers for EDRF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I125752 Enhancer 0.4 FANTOM5 550.8 0.0 -31 0.2 ZFX EDRF1-AS1 TEX36 FANK1 MMP21 EDRF1
GH10I124790 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 46.1 +960.2 960237 2.6 CLOCK FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B EEF1AKMT2 ENSG00000258539 EDRF1-AS1 EDRF1 CTBP2 ENSG00000234134 MMP21
GH10I125146 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.3 +597.6 597614 16.9 PKNOX1 ATF1 FOXA2 SIN3A FEZF1 YY1 GLIS2 DEK ZNF202 SP3 CTBP2 EDRF1 EDRF1-AS1 ENSG00000282787 MIR4296
GH10I125822 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.1 -71.7 -71653 3.2 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B UROS BCCIP EDRF1-AS1 CTBP2 ENSG00000277371
GH10I125767 Enhancer 0.9 Ensembl ENCODE 29.9 -16.5 -16516 2.1 SMAD1 ZNF473 NFIB ZNF195 FEZF1 GLI4 LCORL ZNF776 ZNF350 ZNF214 EDRF1 BCCIP ENSG00000234134 EDRF1-AS1 EEF1AKMT2 CTBP2 MMP21 UROS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EDRF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EDRF1-AS1 Gene

Genomic Locations for EDRF1-AS1 Gene
chr10:125,725,634-125,752,110
(GRCh38/hg38)
Size:
26,477 bases
Orientation:
Minus strand
chr10:127,433,296-127,440,679
(GRCh37/hg19)

Genomic View for EDRF1-AS1 Gene

Genes around EDRF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDRF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDRF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDRF1-AS1 Gene

Proteins for EDRF1-AS1 Gene

Post-translational modifications for EDRF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EDRF1-AS1 Gene

Domains & Families for EDRF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDRF1-AS1 Gene

Function for EDRF1-AS1 Gene

Phenotypes From GWAS Catalog for EDRF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDRF1-AS1 Gene

Localization for EDRF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EDRF1-AS1 Gene

Pathways & Interactions for EDRF1-AS1 Gene

SuperPathways for EDRF1-AS1 Gene

No Data Available

Interacting Proteins for EDRF1-AS1 Gene

Gene Ontology (GO) - Biological Process for EDRF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDRF1-AS1 Gene

Drugs & Compounds for EDRF1-AS1 Gene

No Compound Related Data Available

Transcripts for EDRF1-AS1 Gene

mRNA/cDNA for EDRF1-AS1 Gene

(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDRF1-AS1 Gene

No ASD Table

Relevant External Links for EDRF1-AS1 Gene

GeneLoc Exon Structure for
EDRF1-AS1
ECgene alternative splicing isoforms for
EDRF1-AS1

Expression for EDRF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EDRF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EDRF1-AS1 Gene

This gene is overexpressed in Testis (x4.5).
genes like me logo Genes that share expression patterns with EDRF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDRF1-AS1 Gene

Orthologs for EDRF1-AS1 Gene

Evolution for EDRF1-AS1 Gene

ENSEMBL:
Gene Tree for EDRF1-AS1 (if available)
TreeFam:
Gene Tree for EDRF1-AS1 (if available)

No data available for Orthologs for EDRF1-AS1 Gene

Paralogs for EDRF1-AS1 Gene

No data available for Paralogs for EDRF1-AS1 Gene

Variants for EDRF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for EDRF1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000000908 -- 125,752,575(-) C/T upstream_transcript_variant
rs1000810912 -- 125,752,065(-) C/T upstream_transcript_variant
rs1000927464 -- 125,745,583(-) G/A non_coding_transcript_variant
rs1001304786 -- 125,747,183(-) TAATCTAAT/TAAT intron_variant
rs1001362278 -- 125,744,598(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for EDRF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1140117 CNV insertion 24896259
nsv832017 CNV loss 17160897

Additional Variant Information for EDRF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDRF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EDRF1-AS1 Gene

Disorders for EDRF1-AS1 Gene

Additional Disease Information for EDRF1-AS1

No disorders were found for EDRF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EDRF1-AS1 Gene

Publications for EDRF1-AS1 Gene

No publications were found for EDRF1-AS1 Gene.

Products for EDRF1-AS1 Gene

Sources for EDRF1-AS1 Gene

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